Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0204
         (713 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26155| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.057
SB_50830| Best HMM Match : RVT_1 (HMM E-Value=0.04)                    30   1.6  
SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0)                 28   6.5  
SB_32293| Best HMM Match : BRCA2 (HMM E-Value=0)                       28   8.6  
SB_21130| Best HMM Match : Smg4_UPF3 (HMM E-Value=1.5)                 28   8.6  

>SB_26155| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 815

 Score = 35.1 bits (77), Expect = 0.057
 Identities = 15/60 (25%), Positives = 33/60 (55%)
 Frame = +3

Query: 21  LTLITGLCGMTFGFVVSCVCDTDRTATYLALGSFLPMVLLCGIIWPVEGMHLILQWISYI 200
           +T++T L   + G ++  V  +  TA Y+A  + +P++L  G     + +   +QW++Y+
Sbjct: 671 ITILTCLVAQSIGLLIGTVAPSLPTAVYVAPVTGIPVLLFSGFFVNFDTIPNYMQWLTYV 730


>SB_50830| Best HMM Match : RVT_1 (HMM E-Value=0.04)
          Length = 273

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 115 ARSCRWCYFAASYGPLKVCT*FYSGSATF-FRLRNLQSLSDRCY 243
           AR+C  CY   S  PL+    F  G A F   + NL  +++RC+
Sbjct: 143 ARNCSRCYSQTSAHPLRRPIEFILGPALFLIYMNNLPDVNERCH 186


>SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 1706

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -1

Query: 134 HHRQ-ERAKSQVSSCSVGVTNTGHDETKSHSTQSSDQCELVPN 9
           H+R   +  + V++C +G+TN G   T++  T+   QC   PN
Sbjct: 382 HYRDLSKPINHVNAC-LGITNNGSCLTQATDTEQIGQCSCKPN 423


>SB_32293| Best HMM Match : BRCA2 (HMM E-Value=0)
          Length = 1649

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 131 HRQERAKSQVSSCSVGVTNTGHDETKSHSTQSSD 30
           HR+ R K    + S GV  +G  E  SHS  + D
Sbjct: 197 HRRGRTKKLCKTTSKGVDGSGSSEQSSHSPLTPD 230


>SB_21130| Best HMM Match : Smg4_UPF3 (HMM E-Value=1.5)
          Length = 565

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 131 HRQERAKSQVSSCSVGVTNTGHDETKSHSTQSSD 30
           HR+ R K    + S GV  +G  E  SHS  + D
Sbjct: 338 HRRGRTKKLCKTTSKGVDGSGSSEQSSHSPLTPD 371


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,460,394
Number of Sequences: 59808
Number of extensions: 445152
Number of successful extensions: 1109
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)