Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0204
         (713 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40934-4|AAA81682.1|  873|Caenorhabditis elegans Vacuolar h atpa...    36   0.022
AB055110-1|BAB62291.1|  873|Caenorhabditis elegans VHA-5 protein.      36   0.022
Z99169-1|CAB16306.2|  966|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AB055112-1|BAB62293.1|  966|Caenorhabditis elegans VHA-7 protein.      30   1.4  
Z50872-8|CAA90758.1|  865|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AL031269-3|CAA20334.1|  865|Caenorhabditis elegans Hypothetical ...    30   1.9  
AB055111-1|BAB62292.1|  865|Caenorhabditis elegans VHA-6 protein.      30   1.9  
Z92796-5|CAB07233.1|  518|Caenorhabditis elegans Hypothetical pr...    29   4.4  
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l...    28   7.6  
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p...    28   7.6  

>U40934-4|AAA81682.1|  873|Caenorhabditis elegans Vacuolar h atpase
           protein 5 protein.
          Length = 873

 Score = 36.3 bits (80), Expect = 0.022
 Identities = 18/63 (28%), Positives = 34/63 (53%)
 Frame = +3

Query: 9   IRHKLTLITGLCGMTFGFVVSCVCDTDRTATYLALGSFLPMVLLCGIIWPVEGMHLILQW 188
           ++ KL++I G+  MTFG ++S    T   +       F+P +L  G I+    + +IL+W
Sbjct: 542 MKMKLSVILGISQMTFGVILSFFNHTYNKSKIDIFTVFIPQMLFMGCIFMYLCLQIILKW 601

Query: 189 ISY 197
           + +
Sbjct: 602 LFF 604


>AB055110-1|BAB62291.1|  873|Caenorhabditis elegans VHA-5 protein.
          Length = 873

 Score = 36.3 bits (80), Expect = 0.022
 Identities = 18/63 (28%), Positives = 34/63 (53%)
 Frame = +3

Query: 9   IRHKLTLITGLCGMTFGFVVSCVCDTDRTATYLALGSFLPMVLLCGIIWPVEGMHLILQW 188
           ++ KL++I G+  MTFG ++S    T   +       F+P +L  G I+    + +IL+W
Sbjct: 542 MKMKLSVILGISQMTFGVILSFFNHTYNKSKIDIFTVFIPQMLFMGCIFMYLCLQIILKW 601

Query: 189 ISY 197
           + +
Sbjct: 602 LFF 604


>Z99169-1|CAB16306.2|  966|Caenorhabditis elegans Hypothetical
           protein C26H9A.1 protein.
          Length = 966

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/63 (23%), Positives = 33/63 (52%)
 Frame = +3

Query: 9   IRHKLTLITGLCGMTFGFVVSCVCDTDRTATYLALGSFLPMVLLCGIIWPVEGMHLILQW 188
           ++ K ++I G+  MTFG  +S +      +    + +F+P V+    I+    + +I++W
Sbjct: 607 MKMKASVIIGITQMTFGVFLSVLNHIHFKSYIDIISNFIPQVIFLSCIFIYLCIQIIVKW 666

Query: 189 ISY 197
           I +
Sbjct: 667 IFF 669


>AB055112-1|BAB62293.1|  966|Caenorhabditis elegans VHA-7 protein.
          Length = 966

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/63 (23%), Positives = 33/63 (52%)
 Frame = +3

Query: 9   IRHKLTLITGLCGMTFGFVVSCVCDTDRTATYLALGSFLPMVLLCGIIWPVEGMHLILQW 188
           ++ K ++I G+  MTFG  +S +      +    + +F+P V+    I+    + +I++W
Sbjct: 607 MKMKASVIIGITQMTFGVFLSVLNHIHFKSYIDIISNFIPQVIFLSCIFIYLCIQIIVKW 666

Query: 189 ISY 197
           I +
Sbjct: 667 IFF 669


>Z50872-8|CAA90758.1|  865|Caenorhabditis elegans Hypothetical
           protein VW02B12L.1 protein.
          Length = 865

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/67 (22%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +3

Query: 9   IRHKLTLITGLCGMTFGFVVSCVCDTDRTATYLALGSFLPMVLLCGIIWPVEGMHLILQW 188
           ++ K +++ G+  M FG ++S +      +    +  F+P  L  G I+    + ++++W
Sbjct: 551 MKMKTSILLGISQMAFGIMLSLMNHIGNRSVVDIVFVFIPQCLFLGCIFVYLCLQVLMKW 610

Query: 189 I-SYILP 206
           I  Y+ P
Sbjct: 611 IFFYVKP 617


>AL031269-3|CAA20334.1|  865|Caenorhabditis elegans Hypothetical
           protein VW02B12L.1 protein.
          Length = 865

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/67 (22%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +3

Query: 9   IRHKLTLITGLCGMTFGFVVSCVCDTDRTATYLALGSFLPMVLLCGIIWPVEGMHLILQW 188
           ++ K +++ G+  M FG ++S +      +    +  F+P  L  G I+    + ++++W
Sbjct: 551 MKMKTSILLGISQMAFGIMLSLMNHIGNRSVVDIVFVFIPQCLFLGCIFVYLCLQVLMKW 610

Query: 189 I-SYILP 206
           I  Y+ P
Sbjct: 611 IFFYVKP 617


>AB055111-1|BAB62292.1|  865|Caenorhabditis elegans VHA-6 protein.
          Length = 865

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/67 (22%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +3

Query: 9   IRHKLTLITGLCGMTFGFVVSCVCDTDRTATYLALGSFLPMVLLCGIIWPVEGMHLILQW 188
           ++ K +++ G+  M FG ++S +      +    +  F+P  L  G I+    + ++++W
Sbjct: 551 MKMKTSILLGISQMAFGIMLSLMNHIGNRSVVDIVFVFIPQCLFLGCIFVYLCLQVLMKW 610

Query: 189 I-SYILP 206
           I  Y+ P
Sbjct: 611 IFFYVKP 617


>Z92796-5|CAB07233.1|  518|Caenorhabditis elegans Hypothetical
           protein H25K10.6 protein.
          Length = 518

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/39 (46%), Positives = 22/39 (56%)
 Frame = +1

Query: 181 YSGSATFFRLRNLQSLSDRCYREVGLSMYPLSTLDSYQP 297
           Y  SA F  LRN+  +S R YREV +   PL +L  Y P
Sbjct: 443 YLKSAYFPNLRNI--ISRRSYREVIVHKNPLLSLPYYYP 479


>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
            lineage protein 13 protein.
          Length = 2248

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 227  SQIDATERLDYQCTHCLLWIHINRNLDSYLFDHK 328
            S I A     ++C  C L  + N +L+S++ DH+
Sbjct: 1546 SSISAGREKKFKCQKCSLAFYTNGSLESHMRDHR 1579


>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
            protein LIN-13 protein.
          Length = 2248

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 227  SQIDATERLDYQCTHCLLWIHINRNLDSYLFDHK 328
            S I A     ++C  C L  + N +L+S++ DH+
Sbjct: 1546 SSISAGREKKFKCQKCSLAFYTNGSLESHMRDHR 1579


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,216,418
Number of Sequences: 27780
Number of extensions: 346764
Number of successful extensions: 679
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)