Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0204
         (713 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g76150.1 68414.m08843 maoC-like dehydratase domain-containing...    31   1.0  
At3g46790.1 68416.m05079 pentatricopeptide (PPR) repeat-containi...    29   2.3  
At3g17130.1 68416.m02186 invertase/pectin methylesterase inhibit...    29   3.1  
At5g48050.1 68418.m05937 hypothetical protein low similarity to ...    29   4.0  
At3g29290.1 68416.m03677 pentatricopeptide (PPR) repeat-containi...    28   5.3  

>At1g76150.1 68414.m08843 maoC-like dehydratase domain-containing
           protein contains similarity to Swiss-Prot:P51659
           estradiol 17 beta-dehydrogenase 4 (17-beta-HSD 4)
           (17-beta-hydroxysteroid dehydrogenase 4) [Homo sapiens];
           contains Pfam profile PF01575: MaoC like domain
          Length = 309

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
 Frame = +3

Query: 27  LITGLCGMTFGF--VVSCVCDTDRTATYLALGSFLPMVL----LCGIIWPVEGMHLILQ 185
           ++ GLC + F    ++ CVC  D TA     G FL  V     L   +W +EG+ +I Q
Sbjct: 228 ILHGLCTLGFAIKAIIKCVCKGDPTAVKTISGRFLTTVFPGETLITEMW-LEGLRVIYQ 285


>At3g46790.1 68416.m05079 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 657

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 211 RNLQSLSDRCYREVGLSMYPLSTLDSYQP 297
           R LQ L  RC+ EV   MY   ++D + P
Sbjct: 517 RGLQKLPGRCWMEVRRKMYSFVSVDEFNP 545


>At3g17130.1 68416.m02186 invertase/pectin methylesterase inhibitor
           family protein contains Pfam profile PF04043: Plant
           invertase/pectin methylesterase inhibitor
          Length = 183

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -1

Query: 116 AKSQVSSCSVGVTNTGHDETKSHSTQSSDQCELVPNSC 3
           A+ Q  SC  G+TN G D+  S +  + +  +LV N C
Sbjct: 134 AEKQTDSCQKGITNAGADDESSVAVTARN--KLVKNLC 169


>At5g48050.1 68418.m05937 hypothetical protein low similarity to
           copia-like polyprotein [Arabidopsis thaliana]
           GI:13872712
          Length = 369

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +1

Query: 274 STLDSYQPEFG*LFI*PQVFYYLNLRKANLRSEHTLYSVLILS 402
           +TL SY+  FG + I   +F  L+L K N      L+  L LS
Sbjct: 4   TTLSSYEKSFGIMQIRAYIFVTLDLNKLNYDVWRELFETLCLS 46


>At3g29290.1 68416.m03677 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 540

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +1

Query: 487 CNRFLGCCMKMSV*SDPPTFFEIMYDENSINGMTKNKLIKITFQI 621
           CN FL C ++        T FE M  + ++ G T + ++K   ++
Sbjct: 145 CNSFLSCLLRNGDIQKAFTVFEFMRKKENVTGHTYSLMLKAVAEV 189


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,974,132
Number of Sequences: 28952
Number of extensions: 306438
Number of successful extensions: 624
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)