Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0203
         (350 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    20   6.4  
AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    20   8.5  

>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 20.2 bits (40), Expect = 6.4
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 301 LGLAIGKVKRRTTAIS 254
           +G   GK++RR+TA S
Sbjct: 168 IGGTTGKLRRRSTAAS 183


>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory
          receptor candidate 49 protein.
          Length = 418

 Score = 19.8 bits (39), Expect = 8.5
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -1

Query: 92 KKKLLCMTQTVTDGRLWISQTTSLYLVPN 6
          K KLL +  +     L +S   + YLV N
Sbjct: 5  KNKLLLLDSSTQPNYLILSNKNNTYLVLN 33


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,777
Number of Sequences: 336
Number of extensions: 1260
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  6981810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)