Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0203
         (350 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0317 - 7414477-7414555,7414646-7414701,7415877-7416024,741...    29   1.0  
03_02_1029 - 13488535-13493037                                         28   2.4  
11_01_0292 - 2200714-2201478,2202691-2203395                           27   5.5  
06_03_0127 + 16987627-16987755                                         27   5.5  
03_02_0902 + 12278770-12281448                                         26   7.2  

>03_02_0317 -
           7414477-7414555,7414646-7414701,7415877-7416024,
           7416376-7416380,7416512-7416594,7416707-7416878
          Length = 180

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 219 LQWTIIATFLYTEIAVVLLLTLPIASPSRWQ 311
           LQW I+A  +  E AV ++LTLP     R Q
Sbjct: 3   LQWMILACVVAAEAAVAVMLTLPAPRAVRKQ 33


>03_02_1029 - 13488535-13493037
          Length = 1500

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 236 RDVSLYRDRSRPPFNFADSQSEQMAEVLQIEISSL 340
           R V+LYR   +P   FA   S + +E+ QIE+S +
Sbjct: 494 RTVTLYRGPEQPVVFFAPPTSVRSSELHQIELSEI 528


>11_01_0292 - 2200714-2201478,2202691-2203395
          Length = 489

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 258 IAVVLLLTLPIASPSRWQKFF 320
           +A +L LT+P   P+ W KF+
Sbjct: 244 VAFLLKLTIPSTLPTEWNKFY 264


>06_03_0127 + 16987627-16987755
          Length = 42

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 312 SAICSDWLSAKLKGGRLRSRYRET 241
           S  C+ WLS+    GR R RYR++
Sbjct: 4   SVACTRWLSSARTVGRRRIRYRDS 27


>03_02_0902 + 12278770-12281448
          Length = 892

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -1

Query: 59  TDGRLWISQTTSLYLVPN 6
           TDGRLW   T S YL  N
Sbjct: 59  TDGRLWTGDTGSKYLPAN 76


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,256,365
Number of Sequences: 37544
Number of extensions: 133004
Number of successful extensions: 258
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)