Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0203
         (350 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42513| Best HMM Match : RVT_1 (HMM E-Value=2.2e-12)                 28   2.4  
SB_48266| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.9  
SB_18606| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.9  

>SB_42513| Best HMM Match : RVT_1 (HMM E-Value=2.2e-12)
          Length = 519

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -1

Query: 254 GIEKRRDNCPLQTS*FHYFFNTVIXLYNAANDSG 153
           G  ++RDN  + T  FH +F ++I +     D G
Sbjct: 218 GKNRKRDNVSVSTEAFHDYFKSLIRVETTQQDDG 251


>SB_48266| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 723

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 11/14 (78%), Positives = 11/14 (78%)
 Frame = +2

Query: 221 AMDNYRDVSLYRDR 262
           A DNYRDVS YR R
Sbjct: 435 ADDNYRDVSSYRSR 448


>SB_18606| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1401

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 11/33 (33%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
 Frame = -2

Query: 172  MQQTIVEEQQTYDEILRPR--VTIDLKIEKKNF 80
            ++Q + +++Q  + ++  +  VT DLK+EKK F
Sbjct: 1249 VKQELKDQKQELESLINSKREVTADLKLEKKKF 1281


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,812,499
Number of Sequences: 59808
Number of extensions: 162367
Number of successful extensions: 306
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 306
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 535585339
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)