Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0203
         (350 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069750-1|AAL39895.1|  228|Drosophila melanogaster LP10861p pro...    64   6e-11
AE014296-144|AAN11453.1|  228|Drosophila melanogaster CG13887-PC...    64   6e-11
AE014296-143|AAF47419.1|  228|Drosophila melanogaster CG13887-PB...    64   6e-11
AE013599-453|AAF59228.1| 3242|Drosophila melanogaster CG2093-PA ...    27   8.9  

>AY069750-1|AAL39895.1|  228|Drosophila melanogaster LP10861p
           protein.
          Length = 228

 Score = 63.7 bits (148), Expect = 6e-11
 Identities = 27/42 (64%), Positives = 34/42 (80%)
 Frame = +3

Query: 219 LQWTIIATFLYTEIAVVLLLTLPIASPSRWQKFFKSKFLAYI 344
           L WT+IA FLY EIA+VLLL LP+ +P RW +FFKSKFL+ +
Sbjct: 3   LVWTLIAGFLYAEIALVLLLVLPVLTPYRWNRFFKSKFLSML 44


>AE014296-144|AAN11453.1|  228|Drosophila melanogaster CG13887-PC,
           isoform C protein.
          Length = 228

 Score = 63.7 bits (148), Expect = 6e-11
 Identities = 27/42 (64%), Positives = 34/42 (80%)
 Frame = +3

Query: 219 LQWTIIATFLYTEIAVVLLLTLPIASPSRWQKFFKSKFLAYI 344
           L WT+IA FLY EIA+VLLL LP+ +P RW +FFKSKFL+ +
Sbjct: 3   LVWTLIAGFLYAEIALVLLLVLPVLTPYRWNRFFKSKFLSML 44


>AE014296-143|AAF47419.1|  228|Drosophila melanogaster CG13887-PB,
           isoform B protein.
          Length = 228

 Score = 63.7 bits (148), Expect = 6e-11
 Identities = 27/42 (64%), Positives = 34/42 (80%)
 Frame = +3

Query: 219 LQWTIIATFLYTEIAVVLLLTLPIASPSRWQKFFKSKFLAYI 344
           L WT+IA FLY EIA+VLLL LP+ +P RW +FFKSKFL+ +
Sbjct: 3   LVWTLIAGFLYAEIALVLLLVLPVLTPYRWNRFFKSKFLSML 44


>AE013599-453|AAF59228.1| 3242|Drosophila melanogaster CG2093-PA
           protein.
          Length = 3242

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +2

Query: 221 AMDNYRDVSLYRDRSRPPFNFADSQSEQMAEVLQIEISSLHKR 349
           A++  R   L  D+ +    FA+  + Q+   LQ++I+++H R
Sbjct: 117 ALEAARKKELEMDQPKADAGFAEKLTAQIVNNLQVQITNVHLR 159


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,968,194
Number of Sequences: 53049
Number of extensions: 235067
Number of successful extensions: 641
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 24,988,368
effective HSP length: 76
effective length of database: 20,956,644
effective search space used: 838265760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)