Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0203
         (350 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF304120-1|AAG50233.1|  213|Caenorhabditis elegans 4D656 protein.      48   2e-06
AC024817-36|AAF59580.1|  213|Caenorhabditis elegans Hypothetical...    48   2e-06
L23646-3|AAK67236.1| 1283|Caenorhabditis elegans Hypothetical pr...    27   5.0  
Z72517-2|CAA96694.1|  490|Caenorhabditis elegans Hypothetical pr...    26   8.7  

>AF304120-1|AAG50233.1|  213|Caenorhabditis elegans 4D656 protein.
          Length = 213

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 20/43 (46%), Positives = 26/43 (60%)
 Frame = +3

Query: 219 LQWTIIATFLYTEIAVVLLLTLPIASPSRWQKFFKSKFLAYIS 347
           LQWTI+A  LY EIA+   L LP   P+ W K FKS+    ++
Sbjct: 3   LQWTIVAGVLYAEIAITFTLLLPWIRPTLWSKLFKSRLFTALA 45


>AC024817-36|AAF59580.1|  213|Caenorhabditis elegans Hypothetical
           protein Y54G2A.18 protein.
          Length = 213

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 20/43 (46%), Positives = 26/43 (60%)
 Frame = +3

Query: 219 LQWTIIATFLYTEIAVVLLLTLPIASPSRWQKFFKSKFLAYIS 347
           LQWTI+A  LY EIA+   L LP   P+ W K FKS+    ++
Sbjct: 3   LQWTIVAGVLYAEIAITFTLLLPWIRPTLWSKLFKSRLFTALA 45


>L23646-3|AAK67236.1| 1283|Caenorhabditis elegans Hypothetical
           protein F44E2.4 protein.
          Length = 1283

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -1

Query: 272 EDDCDLGIEKRRDNC 228
           ++DCD G+++R DNC
Sbjct: 66  DEDCDWGMQQRIDNC 80


>Z72517-2|CAA96694.1|  490|Caenorhabditis elegans Hypothetical
           protein T28F4.3 protein.
          Length = 490

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 254 GIEKRRDNCPLQTS*FHYFF 195
           GI+ ++ NCP +   +HYF+
Sbjct: 200 GIQVQKKNCPTKHMVYHYFY 219


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,361,134
Number of Sequences: 27780
Number of extensions: 125825
Number of successful extensions: 258
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)