Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0203
         (350 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   2.4  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   5.6  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    20   9.8  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 2.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 157 VEEQQTYDEILRPRVTIDLKIEK 89
           VEE +TYDE    R+ I   + K
Sbjct: 171 VEENETYDEFDTIRIPIVRSLSK 193


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 96  LKKKTSMYDSDCDGRST 46
           ++  T  YD+ C GR+T
Sbjct: 339 VRPATVQYDTCCQGRAT 355


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 258 IAVVLLLTLPIASPSR 305
           +AVVL  T  +A+P R
Sbjct: 3   VAVVLCTTATLAAPQR 18


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,947
Number of Sequences: 438
Number of extensions: 1526
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8060325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)