Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0203
         (350 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g08960.1 68414.m00996 cation exchanger, putative (CAX11) simi...    33   0.053
At1g44000.1 68414.m05076 expressed protein                             29   1.2  
At3g17780.1 68416.m02268 expressed protein                             28   1.5  
At4g35820.1 68417.m05089 oxidoreductase, 2OG-Fe(II) oxygenase fa...    28   2.0  
At1g48440.1 68414.m05415 expressed protein                             27   2.7  
At5g20870.1 68418.m02478 glycosyl hydrolase family 17 protein si...    27   4.6  
At3g59170.1 68416.m06597 F-box family protein contains F-box dom...    27   4.6  
At5g64740.1 68418.m08141 cellulose synthase, catalytic subunit, ...    26   8.1  
At5g09870.1 68418.m01141 cellulose synthase, catalytic subunit, ...    26   8.1  

>At1g08960.1 68414.m00996 cation exchanger, putative (CAX11) similar
           to sodium/calcium exchanger protein [Mus musculus]
           gi|13925661|gb|AAK49407; Ca2+:Cation Antiporter (CaCA)
           Family member PMID:11500563
          Length = 415

 Score = 33.1 bits (72), Expect = 0.053
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +3

Query: 252 TEIAVVLLLTLPIASPSRWQKFFKSKFLAY 341
           T ++V+L LT+P  SPS W +F++S  + +
Sbjct: 168 TPVSVLLNLTIPKPSPSEWSRFYRSANIVF 197


>At1g44000.1 68414.m05076 expressed protein
          Length = 260

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 208 NHXVCNGQLSRRFSIPRSQSSS 273
           +H  CN  L+RR S+PRS + S
Sbjct: 29  HHRFCNNLLNRRISVPRSSAIS 50


>At3g17780.1 68416.m02268 expressed protein
          Length = 129

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +3

Query: 219 LQWTIIATFLYTEIAVVLLLTLP 287
           LQW I++  +  E+A+ ++LTLP
Sbjct: 3   LQWLILSYVVAAEVAIAVILTLP 25


>At4g35820.1 68417.m05089 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to prolyl 4-hydroxylase, alpha
           subunit, from Mus musculus [SP|Q60715], Homo sapiens
           [GI:18073925]; contains PF03171 2OG-Fe(II) oxygenase
           superfamily domain
          Length = 272

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 9/25 (36%), Positives = 20/25 (80%)
 Frame = -2

Query: 160 IVEEQQTYDEILRPRVTIDLKIEKK 86
           +++   T+DE++  +V++D+KIE+K
Sbjct: 28  LIQHINTFDELVGEQVSVDVKIEEK 52


>At1g48440.1 68414.m05415 expressed protein
          Length = 129

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 219 LQWTIIATFLYTEIAVVLLLTLP 287
           LQW I++  +  E+ + L+LTLP
Sbjct: 3   LQWLILSYVVAVEVVITLVLTLP 25


>At5g20870.1 68418.m02478 glycosyl hydrolase family 17 protein
           similar to elicitor inducible chitinase Nt-SubE76
           GI:11071974 [Nicotiana tabacum]
          Length = 501

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 83  LLCMTQTVTDGRLWISQTTSLYL 15
           L  M  TVT+  LW+ Q  S Y+
Sbjct: 88  LATMASTVTNAELWVQQNVSQYI 110


>At3g59170.1 68416.m06597 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 473

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 311 LPSARTGYRQS*KEDDCDLGIEKRRDNCPL 222
           LP  +T Y QS   D+ D+G  K    CP+
Sbjct: 184 LPKLKTLYLQSVMFDENDIGFRKLLSGCPV 213


>At5g64740.1 68418.m08141 cellulose synthase, catalytic subunit,
           putative similar to gi:2827141 cellulose synthase
           catalytic subunit (Ath-A), Arabidopsis thaliana
          Length = 1084

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +2

Query: 107 YRHSWPKNFVICLLFFHYRLLH 172
           YR       VI  LFFHYR+LH
Sbjct: 275 YRMLIVLRLVILGLFFHYRILH 296


>At5g09870.1 68418.m01141 cellulose synthase, catalytic subunit,
           putative similar to gi:2827141 cellulose synthase
           catalytic subunit (Ath-A), Arabidopsis thaliana
          Length = 1069

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +2

Query: 107 YRHSWPKNFVICLLFFHYRLLH 172
           YR       VI  LFFHYR+LH
Sbjct: 263 YRMLIVLRLVILGLFFHYRILH 284


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,873,364
Number of Sequences: 28952
Number of extensions: 114758
Number of successful extensions: 232
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 439384704
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)