Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0202
         (750 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    24   1.5  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    24   1.5  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    22   4.6  

>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +1

Query: 73  AAFASSAPIGSRGPIGATIPLTTPSFKQHP 162
           AA++SS+P GS     ++   T+P+ + +P
Sbjct: 33  AAYSSSSPSGSSPQHSSSSASTSPAARMYP 62


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +1

Query: 73  AAFASSAPIGSRGPIGATIPLTTPSFKQHP 162
           AA++SS+P GS     ++   T+P+ + +P
Sbjct: 33  AAYSSSSPSGSSPQHSSSSASTSPAARMYP 62


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -1

Query: 138 CQWNSRSDRTARSDGCT 88
           C W+S  + T +S  CT
Sbjct: 18  CNWSSGPNATLQSSACT 34


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.315    0.128    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,159
Number of Sequences: 336
Number of extensions: 1805
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)