Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0202
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p...    47   2e-06
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra...    31   0.13 
SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces p...    29   0.54 
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    29   0.94 
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    27   2.9  
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase...    25   8.7  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    25   8.7  

>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
           protein 1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 567

 Score = 47.2 bits (107), Expect = 2e-06
 Identities = 22/45 (48%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
 Frame = +1

Query: 619 VEQLSRT-NLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNT 750
           +E  SRT N+YIRGL PNT+D++L+     +G + S+KAI+D  T
Sbjct: 289 MESTSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMET 333


>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
           transcription Rct1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +1

Query: 643 LYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNT 750
           L++  L+P T D+DL  +   +G IIS + I DK T
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKET 281


>SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 216

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +1

Query: 79  FASSAPIGSRGPIGATIPLTTPSFKQHPPAQLTGVSTAYERTI 207
           F  S PI +R P      L T +   HPP QL G+  +Y  ++
Sbjct: 5   FRRSIPITARLPSLGIRSLATATASAHPPVQLYGLDGSYASSL 47


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 637 TNLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKN 747
           TN+YI+ L    T+++   +   +G I S   + D+N
Sbjct: 261 TNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQN 297


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = +1

Query: 637 TNLYIRGLSPNTTDKDLVQMCQMYGSIISTK 729
           TNLY+    P   + D+ ++   YG+++  +
Sbjct: 666 TNLYVTNFPPTYDELDITKLFSAYGNVVDVR 696


>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
           desaturase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 362

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 664 DSVLECKDWCGSVAQ 620
           D++ +CK WCG + Q
Sbjct: 316 DNIPDCKSWCGIIYQ 330


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1388

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = -1

Query: 207  YRALVGSGHSS-QLSRRML-LERWCCQWNSRSDRTARSDGC 91
            Y A+  SG+S+ Q+   +  +  W CQW  R D    S  C
Sbjct: 1096 YDAMPTSGYSNFQIPMHVRSVHGWSCQWGPREDSMLLSGIC 1136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.128    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,945,368
Number of Sequences: 5004
Number of extensions: 28674
Number of successful extensions: 87
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)