Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0202
(750 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28) 73 2e-13
SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.009
SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23) 38 0.009
SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18) 31 0.76
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 30 1.7
SB_26181| Best HMM Match : DUF963 (HMM E-Value=0.00098) 29 4.0
SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_53221| Best HMM Match : zf-CCHC (HMM E-Value=0.061) 28 9.3
SB_38555| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
Length = 419
Score = 72.9 bits (171), Expect = 2e-13
Identities = 33/45 (73%), Positives = 39/45 (86%)
Frame = +1
Query: 616 GVEQLSRTNLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNT 750
G E+LS+TNLYIRGL NTTD DLV++C YG+IISTKAILDK+T
Sbjct: 93 GEEKLSKTNLYIRGLKANTTDDDLVRLCHKYGTIISTKAILDKDT 137
Score = 37.1 bits (82), Expect = 0.015
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = +1
Query: 637 TNLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNT 750
TNLYI+ L N + L M YG +IST+ + DK+T
Sbjct: 179 TNLYIQNLPQNCDEAMLENMFSKYGKVISTRILRDKDT 216
>SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 347
Score = 37.9 bits (84), Expect = 0.009
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = +1
Query: 637 TNLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNT 750
+NL+I L TD DL+Q Q +G++IS K +DK T
Sbjct: 229 SNLFIYHLPQEFTDADLMQTFQPFGTVISAKVFIDKQT 266
>SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23)
Length = 362
Score = 37.9 bits (84), Expect = 0.009
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = +1
Query: 637 TNLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNT 750
+NL+I L TD DL+Q Q +G++IS K +DK T
Sbjct: 277 SNLFIYHLPQEFTDADLMQTFQPFGTVISAKVFIDKQT 314
>SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18)
Length = 209
Score = 31.5 bits (68), Expect = 0.76
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = +1
Query: 643 LYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNT 750
L++ L+P TTD+DL + +G+I+S + I D+ T
Sbjct: 122 LFVCKLNPVTTDEDLEIIFSRFGTILSCEVIRDQKT 157
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 30.3 bits (65), Expect = 1.7
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = +1
Query: 616 GVEQLSRTNLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILD 741
G + TN+Y++ + D+ + ++C G I+S K + D
Sbjct: 102 GTQPKKFTNVYVKNFGDDMDDEQMKEICAEAGKIVSLKVMTD 143
>SB_26181| Best HMM Match : DUF963 (HMM E-Value=0.00098)
Length = 620
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 64 TCSAAFASSAPIGSRGPIGATIPLTTPS 147
T S+ SS+P+ S P+ ++ PLT+PS
Sbjct: 204 TSSSPLTSSSPLTSSSPLTSSSPLTSPS 231
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 64 TCSAAFASSAPIGSRGPIGATIPLTTPS 147
T S+ SS+P+ S P+ ++ PLT+PS
Sbjct: 234 TSSSPLTSSSPLTSSSPLTSSSPLTSPS 261
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 64 TCSAAFASSAPIGSRGPIGATIPLTTPS 147
T S+ SS+P+ S P+ + PLT+PS
Sbjct: 240 TSSSPLTSSSPLTSSSPLTSPSPLTSPS 267
>SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2388
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 655 GLSPNTTDKDLVQMCQMYGSIISTKAILDKNT 750
GL+ N K L ++CQ YG+I + K D T
Sbjct: 146 GLNDNVDKKFLQEICQKYGTIQTIKVYYDPQT 177
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +1
Query: 643 LYIRGLSPNTTDKDLVQMCQMYGSIISTKAILD 741
+Y+R LSP+ T++ L + YG++ K + D
Sbjct: 331 VYLRNLSPSITEEKLKEEYSQYGAVDRVKKLKD 363
>SB_53221| Best HMM Match : zf-CCHC (HMM E-Value=0.061)
Length = 410
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 622 EQLSRTNLYIRGLSPNTTDKDLVQMCQMYG 711
E++SR L + GL D+DLV + YG
Sbjct: 185 EEVSRARLQVHGLPWEVPDEDLVALLSPYG 214
>SB_38555| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 156
Score = 27.9 bits (59), Expect = 9.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 129 NSRSDRTARSDGCTRSECCTARGS 58
+S ++ R CT +ECCT RG+
Sbjct: 126 SSMGTKSTRLTRCTGTECCTGRGN 149
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.315 0.128 0.379
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,893,430
Number of Sequences: 59808
Number of extensions: 260677
Number of successful extensions: 695
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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