Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0202
(750 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical pr... 59 3e-09
Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical pr... 58 9e-09
Z81522-4|CAB04233.1| 771|Caenorhabditis elegans Hypothetical pr... 33 0.16
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 32 0.38
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 32 0.38
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 32 0.38
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 32 0.38
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 31 1.2
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 31 1.2
AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor pr... 31 1.2
AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical ... 30 1.5
AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical ... 30 1.5
AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical ... 30 1.5
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 30 2.0
U80455-3|AAO38606.1| 145|Caenorhabditis elegans Elav-type rna b... 30 2.0
U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna b... 30 2.0
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 30 2.0
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 30 2.0
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 30 2.0
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 30 2.0
Z80214-1|CAB02262.1| 500|Caenorhabditis elegans Hypothetical pr... 29 2.7
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 29 2.7
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 29 2.7
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 29 2.7
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 29 2.7
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 29 2.7
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 29 2.7
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 28 8.1
AF024493-4|AAB70321.2| 249|Caenorhabditis elegans Hypothetical ... 28 8.1
>Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical
protein R10E4.2a protein.
Length = 357
Score = 59.3 bits (137), Expect = 3e-09
Identities = 28/41 (68%), Positives = 31/41 (75%)
Frame = +1
Query: 628 LSRTNLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNT 750
LS TNLYIRGL PNT D L +MC YG+I STKAI+DK T
Sbjct: 78 LSSTNLYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKAT 118
>Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical
protein R10E4.2b protein.
Length = 409
Score = 57.6 bits (133), Expect = 9e-09
Identities = 27/40 (67%), Positives = 30/40 (75%)
Frame = +1
Query: 631 SRTNLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNT 750
S TNLYIRGL PNT D L +MC YG+I STKAI+DK T
Sbjct: 105 SSTNLYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKAT 144
>Z81522-4|CAB04233.1| 771|Caenorhabditis elegans Hypothetical
protein F32B4.4a protein.
Length = 771
Score = 33.5 bits (73), Expect = 0.16
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +1
Query: 622 EQLSRTNLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDK 744
+ + +T+++IRG++P T + Q+ YG +I +K K
Sbjct: 89 DDVKKTSIWIRGMTPATKASSVKQLASQYGKVIQSKIFNSK 129
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 32.3 bits (70), Expect = 0.38
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +1
Query: 619 VEQLSRTNLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKN 747
+++ NLY++ L D L + + YG+I S K + D+N
Sbjct: 311 MQKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDEN 353
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 32.3 bits (70), Expect = 0.38
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +1
Query: 619 VEQLSRTNLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKN 747
+++ NLY++ L D L + + YG+I S K + D+N
Sbjct: 251 MQKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDEN 293
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 32.3 bits (70), Expect = 0.38
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +1
Query: 619 VEQLSRTNLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKN 747
+++ NLY++ L D L + + YG+I S K + D+N
Sbjct: 248 MQKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDEN 290
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 32.3 bits (70), Expect = 0.38
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +1
Query: 619 VEQLSRTNLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKN 747
+++ NLY++ L D L + + YG+I S K + D+N
Sbjct: 311 MQKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDEN 353
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 640 NLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNT 750
NL+I L D +L+QM +G I+S K +D+ T
Sbjct: 430 NLFIYHLPQEFGDAELIQMFAPFGHIVSAKVFVDRAT 466
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 640 NLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNT 750
NL+I L D +L+QM +G I+S K +D+ T
Sbjct: 430 NLFIYHLPQEFGDAELIQMFAPFGHIVSAKVFVDRAT 466
>AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor
protein 12 protein.
Length = 248
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 637 TNLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNT 750
T +++ GL +T+DK L + + +G I I D+NT
Sbjct: 35 TKIFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNT 72
>AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical
protein H28G03.1b protein.
Length = 315
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 643 LYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNT 750
L+I GLS +TTD+ L +G ++ I D NT
Sbjct: 51 LFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNT 86
>AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical
protein H28G03.1c protein.
Length = 335
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 643 LYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNT 750
L+I GLS +TTD+ L +G ++ I D NT
Sbjct: 71 LFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNT 106
>AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical
protein H28G03.1a protein.
Length = 336
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 643 LYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNT 750
L+I GLS +TTD+ L +G ++ I D NT
Sbjct: 72 LFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNT 107
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +1
Query: 619 VEQLSRTNLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKN 747
V++ NLY++ + + D L +G+I S K ++D+N
Sbjct: 337 VQRYQGVNLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDEN 379
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +1
Query: 619 VEQLSRTNLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKN 747
V++ NLY++ + + D L +G+I S K ++D+N
Sbjct: 337 VQRYQGVNLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDEN 379
>U80455-3|AAO38606.1| 145|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform c protein.
Length = 145
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 640 NLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNT 750
NL+I L + D DL+ +G I+S K +DK T
Sbjct: 77 NLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVT 113
>U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform b protein.
Length = 420
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 640 NLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNT 750
NL+I L + D DL+ +G I+S K +DK T
Sbjct: 336 NLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVT 372
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 640 NLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNT 750
NL+I L + D DL+ +G I+S K +DK T
Sbjct: 500 NLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVT 536
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 640 NLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNT 750
NL+I L + D DL+ +G I+S K +DK T
Sbjct: 500 NLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVT 536
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 640 NLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNT 750
NL+I L + D DL+ +G I+S K +DK T
Sbjct: 429 NLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVT 465
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 640 NLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNT 750
NL+I L + D DL+ +G I+S K +DK T
Sbjct: 500 NLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVT 536
>Z80214-1|CAB02262.1| 500|Caenorhabditis elegans Hypothetical
protein C27D8.2 protein.
Length = 500
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/48 (25%), Positives = 25/48 (52%)
Frame = -2
Query: 155 CLKDGVVNGIVAPIGPRDPMGALEANAALHVARSSFELESRRCKHPRA 12
CL G + + G A+++L ++R +F ++ ++CK P+A
Sbjct: 277 CLDPGHIKKNLGRCGANMNTAPFNAHSSLPLSRPAFNMKMKKCKEPKA 324
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +1
Query: 643 LYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNT 750
+YI GLS ++ D++ + YG +++ I DK+T
Sbjct: 40 IYIGGLSYALSEGDVIAVFSQYGEVMNINLIRDKDT 75
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +1
Query: 628 LSRTNLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNT 750
+S LY+ G+ + T+ L + YG++ ++ ILDK T
Sbjct: 111 VSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKAT 151
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +1
Query: 628 LSRTNLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNT 750
+S LY+ G+ + T+ L + YG++ ++ ILDK T
Sbjct: 73 VSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKAT 113
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +1
Query: 628 LSRTNLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNT 750
+S LY+ G+ + T+ L + YG++ ++ ILDK T
Sbjct: 73 VSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKAT 113
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +1
Query: 628 LSRTNLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNT 750
+S LY+ G+ + T+ L + YG++ ++ ILDK T
Sbjct: 111 VSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKAT 151
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +1
Query: 628 LSRTNLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNT 750
+S LY+ G+ + T+ L + YG++ ++ ILDK T
Sbjct: 111 VSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKAT 151
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +1
Query: 628 LSRTNLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNT 750
L L++R L T + DL + + YG + + ++DK T
Sbjct: 276 LETGRLFLRNLPYATKEDDLQFLFKKYGEVSEVQVVIDKKT 316
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 637 TNLYIRGLSPNTTDKDLVQMCQMYGSIISTK 729
T++Y+ +S TTD DL + YG I +
Sbjct: 237 TSVYVGNISQQTTDADLRDLFSTYGDIAEVR 267
>AF024493-4|AAB70321.2| 249|Caenorhabditis elegans Hypothetical
protein F23F1.2 protein.
Length = 249
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 55 DRATCSAAFASSAPIGSRGPIGATIPLTTPSFKQHPPA 168
D A +A A ++P ++ P+G P T+P HP A
Sbjct: 201 DAAAIAAVLAQASPTLNKSPVGVAPPQTSPGL--HPVA 236
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.315 0.128 0.379
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,289,556
Number of Sequences: 27780
Number of extensions: 177913
Number of successful extensions: 636
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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