Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0202
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   1.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   1.0  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   7.1  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   7.1  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 61  ATCSAAFASSAPIGSRGPIGATIPLTTPSFKQHPPAQL 174
           A+C     ++A + S G  G    L  PSF   PP+++
Sbjct: 3   ASCLIFVGAAAAVTSAGGHGFDAHLRGPSFVMEPPSRV 40


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 61  ATCSAAFASSAPIGSRGPIGATIPLTTPSFKQHPPAQL 174
           A+C     ++A + S G  G    L  PSF   PP+++
Sbjct: 3   ASCLIFVGAAAAVTSAGGHGFDAHLRGPSFVMEPPSRV 40


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = +1

Query: 619 VEQLSRTNLYIRGLSPNTTDKDLVQMCQMY 708
           ++ L+R +LY+  +  +   +DLV M + +
Sbjct: 320 LDDLTRRSLYLSDIPLHDATRDLVLMSEQF 349


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = +1

Query: 619 VEQLSRTNLYIRGLSPNTTDKDLVQMCQMY 708
           ++ L+R +LY+  +  +   +DLV M + +
Sbjct: 320 LDDLTRRSLYLSDIPLHDATRDLVLMSEQF 349


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.128    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,740
Number of Sequences: 438
Number of extensions: 2513
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)