Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0202
(750 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 36 0.029
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 36 0.029
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 34 0.088
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 33 0.15
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 33 0.20
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 33 0.20
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 33 0.27
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 32 0.35
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 32 0.35
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 32 0.47
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 32 0.47
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 31 0.62
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 31 0.82
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 31 1.1
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 30 1.4
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 30 1.4
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 30 1.9
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 30 1.9
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 30 1.9
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 30 1.9
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 29 2.5
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 29 2.5
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 29 4.4
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 29 4.4
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 29 4.4
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 29 4.4
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 29 4.4
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 29 4.4
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 29 4.4
At5g39500.1 68418.m04783 pattern formation protein, putative sim... 28 5.8
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 28 5.8
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 28 7.6
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 28 7.6
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 28 7.6
At3g10845.1 68416.m01306 RNA recognition motif (RRM)-containing ... 28 7.6
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 28 7.6
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 35.9 bits (79), Expect = 0.029
Identities = 14/40 (35%), Positives = 26/40 (65%)
Frame = +1
Query: 631 SRTNLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNT 750
S+ N+++RGL +TT ++L ++YG I ++DK+T
Sbjct: 161 SQRNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDT 200
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 35.9 bits (79), Expect = 0.029
Identities = 13/35 (37%), Positives = 24/35 (68%)
Frame = +1
Query: 646 YIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNT 750
++RGL +T +KDL + +G++I +K I D++T
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDT 44
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 34.3 bits (75), Expect = 0.088
Identities = 12/38 (31%), Positives = 25/38 (65%)
Frame = +1
Query: 637 TNLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNT 750
+ +++ GLSP TD+DL + +G I+ + +L+++T
Sbjct: 7 SRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDT 44
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 33.5 bits (73), Expect = 0.15
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = +1
Query: 622 EQLSRTNLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILD 741
E+L +NLY++ L + D+ L +M YG++ S K +++
Sbjct: 323 EKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMN 362
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 631 SRTNLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKN 747
S TN+Y++ L TD +L + YG I S + D++
Sbjct: 223 SFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQS 261
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 33.1 bits (72), Expect = 0.20
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +1
Query: 628 LSRTNLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNT 750
+S+ L+IRGL+ +TT + L + YG + ILDK T
Sbjct: 72 ISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVT 112
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 33.1 bits (72), Expect = 0.20
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +1
Query: 628 LSRTNLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNT 750
+S+ L+IRGL+ +TT + L + YG + ILDK T
Sbjct: 72 ISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVT 112
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 32.7 bits (71), Expect = 0.27
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = +1
Query: 628 LSRTNLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNT 750
+++ N+++RG +TT ++L + YG I ++DK+T
Sbjct: 405 IAQRNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDT 445
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 32.3 bits (70), Expect = 0.35
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = +1
Query: 637 TNLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDK 744
+ L+++G+S ++T++ L Q YG ++ I+DK
Sbjct: 21 STLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDK 56
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 32.3 bits (70), Expect = 0.35
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +1
Query: 622 EQLSRTNLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILD 741
+++ TN+Y++ LS TTD +L YGSI S + D
Sbjct: 220 DKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRD 259
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 616 GVEQLSRTNLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILD 741
G + NLY++ L TD+ L ++ +G+I S K + D
Sbjct: 321 GGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRD 362
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 31.9 bits (69), Expect = 0.47
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 634 RTNLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDK 744
+T LY+ GLS TT+ L + +G++I ++DK
Sbjct: 76 KTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDK 112
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 31.9 bits (69), Expect = 0.47
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +1
Query: 622 EQLSRTNLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILD 741
E+ NLY++ L + D+ L +M YG++ S+K +L+
Sbjct: 327 EKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLN 366
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 31.5 bits (68), Expect = 0.62
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 637 TNLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILD 741
TN+Y++ L+ +TTD DL YG I S + D
Sbjct: 29 TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKD 63
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 31.1 bits (67), Expect = 0.82
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 637 TNLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNT 750
T +++ GL+ T + L Q + YG I+ I DKNT
Sbjct: 24 TKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNT 61
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +1
Query: 628 LSRTNLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNT 750
+S + L+I G++ + + L + YG ++ T+ ILD+ T
Sbjct: 37 MSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRET 77
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 637 TNLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDK 744
TNL++ GLS TT + L +G + K + D+
Sbjct: 56 TNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDR 91
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 637 TNLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNT 750
T +Y+ LSP TTD L + YG+++ + D+ T
Sbjct: 3 TRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYT 40
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +1
Query: 637 TNLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNT 750
T LY+ GLS TDKDL G + S +++ T
Sbjct: 72 TTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRT 109
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +1
Query: 637 TNLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNT 750
T LY+ GLS TDKDL G + S +++ T
Sbjct: 71 TTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRT 108
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 646 YIRGLSPNTTDKDLVQMCQMYGSIISTKAILDK 744
+I GL+ T+D+ L + YG ++ K +LDK
Sbjct: 10 FIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDK 42
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +1
Query: 628 LSRTNLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNT 750
+S + +++ G+S +T + L + YG ++ K I+D+ T
Sbjct: 31 MSSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRET 71
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +1
Query: 637 TNLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKN 747
+NLY++ LS + + L ++ YG I+S K + +N
Sbjct: 304 SNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHEN 340
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 640 NLYIRGLSPNTTDKDLVQMCQMYGSI 717
NL++ L+P TT+ DL ++ YG I
Sbjct: 19 NLWVGSLTPETTESDLTELFGRYGDI 44
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 643 LYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDK 744
+++ GL +T + L++ + YG I KA+ DK
Sbjct: 142 IFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDK 175
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 643 LYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDK 744
+++ GL +T + L++ + YG I KA+ DK
Sbjct: 142 IFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDK 175
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 643 LYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDK 744
+++ GL +T + L++ + YG I KA+ DK
Sbjct: 142 IFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDK 175
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 643 LYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDK 744
L+I GLS T++K L + +G ++ K I+DK
Sbjct: 284 LFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDK 317
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 637 TNLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNT 750
T +++ GL+ T + L + YG I+ I DKNT
Sbjct: 24 TKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNT 61
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 640 NLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNT 750
NL+I + D++L Q +G ++S K +DK T
Sbjct: 340 NLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKAT 376
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 640 NLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNT 750
NL+I + D++L Q +G ++S K +DK T
Sbjct: 331 NLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKAT 367
>At5g39500.1 68418.m04783 pattern formation protein, putative
similar to SP|Q42510 Pattern formation protein EMB30
{Arabidopsis thaliana}; contains Pfam profile PF01369:
Sec7 domain
Length = 1443
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 76 AFASSAPIGSRGPIGATIPLTTPSFKQHP 162
AF P+ + G I + I L PSF++HP
Sbjct: 345 AFDEDVPLFALGLINSAIELGGPSFREHP 373
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +1
Query: 622 EQLSRTNLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDK 744
E L +++ GL +T L+ + YG I K ++DK
Sbjct: 123 EDLVHRKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDK 163
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +1
Query: 643 LYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNT 750
+++ GL P TD++ Q ++YG + + D+ T
Sbjct: 112 IFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQAT 147
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 640 NLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNT 750
NL+I + D++L Q +G ++S K +DK T
Sbjct: 349 NLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKAT 385
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 640 NLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILDKNT 750
NL+I + D++L Q +G ++S K +DK T
Sbjct: 350 NLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKAT 386
>At3g10845.1 68416.m01306 RNA recognition motif (RRM)-containing
protein similar to SP|P42731 Polyadenylate-binding
protein 2 (Poly(A) binding protein 2) (PABP 2)
{Arabidopsis thaliana}; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 423
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 643 LYIRGLSPNTTDKDLVQMCQMYGSIISTKAI 735
L++ LSP T D+ CQ G ++S + I
Sbjct: 129 LFVANLSPQTKILDIFGFCQDVGEVVSVRLI 159
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 637 TNLYIRGLSPNTTDKDLVQMCQMYGSIISTKAILD 741
TN+Y++ L TD DL ++ +G I S + D
Sbjct: 119 TNVYVKNLVETATDADLKRLFGEFGEITSAVVMKD 153
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.315 0.128 0.379
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,645,675
Number of Sequences: 28952
Number of extensions: 163793
Number of successful extensions: 608
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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