Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0201
         (679 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0JKH2 Cluster: Os01g0674700 protein; n=4; Oryza sativa...    34   3.7  
UniRef50_Q234N1 Cluster: Putative uncharacterized protein; n=2; ...    33   4.8  
UniRef50_A7QZW9 Cluster: Chromosome undetermined scaffold_292, w...    33   6.4  

>UniRef50_Q0JKH2 Cluster: Os01g0674700 protein; n=4; Oryza sativa|Rep:
            Os01g0674700 protein - Oryza sativa subsp. japonica
            (Rice)
          Length = 1045

 Score = 33.9 bits (74), Expect = 3.7
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +3

Query: 366  FTNQRLDSNYTCNGFWVNYYHKIMKLQS 449
            +T + ++ +Y C  FWVNY H+  ++ +
Sbjct: 1007 YTKEHMEKSYRCENFWVNYTHRCPRIMN 1034


>UniRef50_Q234N1 Cluster: Putative uncharacterized protein; n=2;
            Tetrahymena thermophila SB210|Rep: Putative
            uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1201

 Score = 33.5 bits (73), Expect = 4.8
 Identities = 14/37 (37%), Positives = 26/37 (70%)
 Frame = -2

Query: 507  SMKTYTELYITVYKYIKLNMIEVSLFYDNNLPKNHYM 397
            S K  ++++ ++YK  K++ I  SL+YD N+ KN+Y+
Sbjct: 970  SQKFESQIFTSLYKQGKIDKISYSLYYDENV-KNYYL 1005


>UniRef50_A7QZW9 Cluster: Chromosome undetermined scaffold_292,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome undetermined scaffold_292, whole genome
           shotgun sequence - Vitis vinifera (Grape)
          Length = 197

 Score = 33.1 bits (72), Expect = 6.4
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -1

Query: 178 HKNAICSSSNLNFKPAMYSAQTLGSIAAHALHRYVLKKSH 59
           H+N  CS+ NL+      S QT  SI++ AL +++   SH
Sbjct: 31  HRNPKCSAQNLSISSPPLSLQTSSSISSMALSQFLKNPSH 70


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 601,444,983
Number of Sequences: 1657284
Number of extensions: 11155771
Number of successful extensions: 23048
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23046
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52479343733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)