Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0201
         (679 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0230 + 27718840-27720188,27720983-27721174,27721488-277215...    34   0.12 
12_01_0241 - 1807379-1807418,1807579-1807625,1807800-1807892,180...    28   7.9  
11_01_0244 - 1877497-1877536,1877697-1877743,1877917-1878009,187...    28   7.9  
09_01_0086 - 1225132-1225299,1225530-1225679,1227629-1228006,122...    28   7.9  

>01_06_0230 + 27718840-27720188,27720983-27721174,27721488-27721569,
            27721651-27721839,27721964-27722077,27722470-27722560,
            27722632-27722789,27723401-27723826,27724355-27724727,
            27725075-27725238
          Length = 1045

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +3

Query: 366  FTNQRLDSNYTCNGFWVNYYHKIMKLQS 449
            +T + ++ +Y C  FWVNY H+  ++ +
Sbjct: 1007 YTKEHMEKSYRCENFWVNYTHRCPRIMN 1034


>12_01_0241 -
           1807379-1807418,1807579-1807625,1807800-1807892,
           1808167-1808267,1808368-1808440,1808684-1808845,
           1809003-1809034,1809399-1809471,1809713-1809768,
           1809871-1810105
          Length = 303

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = +3

Query: 33  VLQIS*LIL*DFFSTYRCNACAAIDPRVCALYIAGLKFKL 152
           +L++  L L  FFS Y   A AA  P     Y+AGL F L
Sbjct: 184 LLEVIELQLPSFFSDYDPRAAAANLPSSVQAYLAGLTFAL 223


>11_01_0244 -
           1877497-1877536,1877697-1877743,1877917-1878009,
           1878284-1878384,1878485-1878557,1878801-1878962,
           1879123-1879154,1879257-1879342,1879457-1879584,
           1879827-1879882,1879985-1880219
          Length = 350

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = +3

Query: 33  VLQIS*LIL*DFFSTYRCNACAAIDPRVCALYIAGLKFKL 152
           +L++  L L  FFS Y   A AA  P     Y+AGL F L
Sbjct: 231 LLEVIELQLPSFFSDYDPRAAAANLPSSVQAYLAGLTFAL 270


>09_01_0086 -
           1225132-1225299,1225530-1225679,1227629-1228006,
           1229103-1229150
          Length = 247

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -2

Query: 507 SMKTYTELYITVYKYIKLNMIEVSLFYDNNLPKNHYMYNLNLIFD 373
           S K Y    +T +K  ++ ++E  + +DNN  +++    LNL+ D
Sbjct: 3   SFKVYLISKMTSFKGEEITVVEEPILFDNNQEEDNSSNPLNLLAD 47


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,289,910
Number of Sequences: 37544
Number of extensions: 272846
Number of successful extensions: 433
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)