Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0201
         (679 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92790-3|CAB07228.1|  383|Caenorhabditis elegans Hypothetical pr...    29   4.0  
AF077539-3|AAC26291.1|  310|Caenorhabditis elegans Hypothetical ...    28   5.3  

>Z92790-3|CAB07228.1|  383|Caenorhabditis elegans Hypothetical
           protein H03G16.4 protein.
          Length = 383

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -2

Query: 507 SMKTYTELYITVYKYIKLNMIEVSLFYDNNL-PKNHYMYNLNL 382
           S KTY E Y+  YK  K + +E+ +F +  +    H   NLNL
Sbjct: 50  SEKTYREFYVAYYKIGKSSDVELPVFSEMPIVALLHIFENLNL 92


>AF077539-3|AAC26291.1|  310|Caenorhabditis elegans Hypothetical
           protein T25D3.2 protein.
          Length = 310

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -2

Query: 540 PQIWGPKLITPSMKTYTELYITVYKYIKLNMIEVSL-FYDNNLPKNHYM 397
           P+ W PKL  P++K        + KYIK+ + E ++   D +   ++Y+
Sbjct: 125 PRYWVPKLFFPALKNVVLYSEILDKYIKVTVTERAMRLIDEHFGLDYYI 173


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,335,972
Number of Sequences: 27780
Number of extensions: 284654
Number of successful extensions: 519
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)