Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0201
         (679 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13210.1 68418.m01516 expressed protein                             28   6.5  
At3g10460.1 68416.m01254 self-incompatibility protein-related si...    27   8.6  

>At5g13210.1 68418.m01516 expressed protein
          Length = 673

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 529 PNLRSRSNLLPKPTRSAGESAKYI 600
           P LR  ++LLPKPT ++G S  ++
Sbjct: 10  PELRDPNSLLPKPTTTSGPSDPFM 33


>At3g10460.1 68416.m01254 self-incompatibility protein-related
           similar to self-incompatibility [Papaver nudicaule]
           GI:3097262
          Length = 132

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 504 MKTYTELYITVYKYIKLNMIEVSLFYDNNLPKNHYM 397
           MK    +++ V      N+I  S+F  NNLP  HY+
Sbjct: 1   MKLRVTIFLMVVCLYTENVIGGSVFIYNNLPHGHYL 36


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,080,355
Number of Sequences: 28952
Number of extensions: 246286
Number of successful extensions: 460
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)