Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0200
         (412 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   0.65 
SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr ...    26   2.0  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    25   6.1  
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    25   6.1  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    24   8.0  
SPAC1071.11 |||NADH-dependent flavin oxidoreductase |Schizosacch...    24   8.0  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    24   8.0  
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb...    24   8.0  
SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr 1|||M...    24   8.0  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.9 bits (59), Expect = 0.65
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +1

Query: 127 TKYVIKKSTDWSHSERQSLWKEYEIDYLIQEAKVLLYLVLTFHCTL 264
           TK+    S DW  +  Q   + Y +  L+   K L YL L ++C L
Sbjct: 502 TKFFQSTSIDWVEAGLQVCRQGYNMLQLLIHRKGLTYLHLDYNCNL 547


>SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 622

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 130 KYVIKKSTDWSHSERQSLWKEYEIDYLIQEAKVLLYLVLTFHC 258
           KY+ + S         +LWK+  I   I   K+L+  + +FHC
Sbjct: 470 KYLAEFSASLELDPNLALWKKQVIFSKIGHPKLLVMPISSFHC 512


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 38  KNFIHTHKIIKVFLFRSQIELEMRRKLRPGQSM 136
           K  I  H+   VF+ R + +L + R L PG+S+
Sbjct: 72  KVIIEPHRHAGVFIARGKEDLLVTRNLVPGESV 104


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 278 DARLVTLGWVLAWLICDFKFD 340
           D +L+T+ W  +  I DF+ D
Sbjct: 371 DLKLITINWFFSLFIKDFRLD 391


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 15/50 (30%), Positives = 19/50 (38%)
 Frame = -2

Query: 405 CRYITDCTYACICLLQPPSIVSSNLKSQINQANTQPRVTNRASKHLMQSA 256
           C Y +     CIC  +   I S  LK  +      P VT  A K+    A
Sbjct: 90  CFYCSRKIIKCICNEEHVGIESVQLKLILLLCQNLPNVTTNAKKYFSSLA 139


>SPAC1071.11 |||NADH-dependent flavin oxidoreductase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 244

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = +1

Query: 70  SISI*IPNRTRDETKTSSRTKYVIKKSTDWSHSERQSLW--KEYEIDYLIQEAK 225
           S +I IP+RT +  + S+R    +  S+   HSE  SL   ++++I+ L+   K
Sbjct: 85  SFNIKIPSRTANAIQQSNRVIVHLLSSSIKKHSEWASLLAKQKHQINPLMNSEK 138


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 156  ICRFFNYILCPGRSFRLISSSIWDLNRNTFI 64
            +C+ F+ I+       LI   IWDLNR  F+
Sbjct: 2350 VCKAFSIIVSGDAGGNLI---IWDLNRAEFV 2377


>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 827

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 336 NLKSQINQANTQPRVTNRASK 274
           NLKS I QAN   R  N+ S+
Sbjct: 10  NLKSSIRQANLGTRPNNKKSR 30


>SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 29/89 (32%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
 Frame = -3

Query: 410 IDVVISQTALMH-VYVSS--NLLLLSHQT*NHKSTKPTPNQESPIEHQNI*CKVQWNVRT 240
           ID+ I   A  H +YV+S  N+  LS        TK T N +S   H N  C    ++RT
Sbjct: 87  IDLYILDFATQHNLYVASLRNMGFLSLVF----HTKET-NSKSSTLHSNPYCPEHHSIRT 141

Query: 239 KYSRTFASCMR*SISYSFQRLCLSEWLQS 153
             S   A+    S S S +    +EW  S
Sbjct: 142 LPSAVTATTSNISTSSSHRSDLPNEWTNS 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,730,523
Number of Sequences: 5004
Number of extensions: 33461
Number of successful extensions: 120
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)