Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0200
         (412 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0522 - 19960092-19960595,19962737-19962880,19963042-199631...    27   4.4  
07_03_1193 - 24702135-24702421,24702835-24703160,24703240-247039...    27   5.8  
02_05_0220 - 26885502-26885561,26885940-26886739,26887055-268874...    27   5.8  
04_01_0581 + 7555323-7555383,7555640-7555727,7556063-7557047           27   7.7  

>12_02_0522 -
           19960092-19960595,19962737-19962880,19963042-19963131,
           19963215-19963320,19963400-19963574,19963849-19963951,
           19964382-19964636,19964726-19964803,19964908-19965000,
           19965091-19965222,19965898-19966002,19966127-19966201,
           19966284-19966340,19966419-19966532,19966613-19966756,
           19966886-19966969,19967071-19967164,19967244-19967369,
           19967507-19967580,19967672-19967875,19968234-19968388,
           19968860-19968947,19969505-19969730,19970235-19970286,
           19970766-19970958,19973221-19973314,19973744-19973788,
           19974874-19974896
          Length = 1210

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
 Frame = +1

Query: 103 DETKTS--SRTKYVIKKSTDWS-HSERQSLW 186
           DETKT    +TK V++K  DW   +E Q +W
Sbjct: 586 DETKTEVKKKTKTVVEKYWDWELTNETQPIW 616


>07_03_1193 -
           24702135-24702421,24702835-24703160,24703240-24703910,
           24704342-24704421,24704515-24704572
          Length = 473

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 323 KSTKPTPNQESPIEHQNI*CKVQWNVRTKYSRTFAS 216
           K T P+ +  +P    +  C V WNV   YS+  AS
Sbjct: 200 KLTTPSSSSPAPPLMMSCLCAVTWNVTCTYSQHLAS 235


>02_05_0220 - 26885502-26885561,26885940-26886739,26887055-26887421,
            26887942-26888055,26888132-26888228,26889115-26889235,
            26889306-26889390,26889494-26889643,26889871-26889987,
            26890123-26890221,26890439-26890495,26890581-26890664,
            26890759-26890828,26891015-26891169,26891557-26892095,
            26892327-26892393,26892436-26892984,26893574-26893768,
            26894485-26894569,26895822-26896441,26897154-26897486,
            26897552-26897616,26897868-26897955,26898250-26898331,
            26898720-26898796,26899152-26899256,26899496-26899630,
            26900199-26900888,26901474-26902261,26902990-26904673
          Length = 2825

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +1

Query: 103  DETKTSSRTKYVIKKSTDWSHSERQSLWKEYEIDYLI 213
            D T+TSSR +  +K++  W  SE  S+   YE + L+
Sbjct: 1892 DSTETSSRMRRFMKRNYKW--SEHLSMANNYEENMLL 1926


>04_01_0581 + 7555323-7555383,7555640-7555727,7556063-7557047
          Length = 377

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 9/37 (24%), Positives = 22/37 (59%)
 Frame = +1

Query: 103 DETKTSSRTKYVIKKSTDWSHSERQSLWKEYEIDYLI 213
           ++T   ++ ++  +++  W+ +  Q LW E+EI  L+
Sbjct: 32  NDTGRRTKRRWKEEEAAQWAIARVQQLWNEWEIQCLV 68


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,369,488
Number of Sequences: 37544
Number of extensions: 187815
Number of successful extensions: 431
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)