Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0200
         (412 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11560| Best HMM Match : Peptidase_M1 (HMM E-Value=0)                28   2.6  
SB_55200| Best HMM Match : E-MAP-115 (HMM E-Value=0.85)                27   7.9  
SB_53232| Best HMM Match : OAR (HMM E-Value=0.92)                      27   7.9  
SB_49614| Best HMM Match : E-MAP-115 (HMM E-Value=0.85)                27   7.9  
SB_40579| Best HMM Match : E-MAP-115 (HMM E-Value=0.85)                27   7.9  
SB_26781| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_48968| Best HMM Match : Dehydrin (HMM E-Value=0.99)                 27   7.9  

>SB_11560| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
          Length = 854

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +2

Query: 302 WVLAWLICDFKFDETIEG 355
           ++LA+++CDFK  ETI G
Sbjct: 319 YLLAFIVCDFKHTETITG 336


>SB_55200| Best HMM Match : E-MAP-115 (HMM E-Value=0.85)
          Length = 929

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = +1

Query: 37  KELYTYSQNYKSISI*IPNRT--RDETKTSSRTKYVIKKSTDWSHSERQSLWKEYEIDYL 210
           K+ Y  ++N K   + I  R   R+ETK  SRT+  IKK+      + Q      E++  
Sbjct: 24  KDYYEKNRNKKIAQV-IERRKARREETKGKSRTRTEIKKAASKKRRKEQRATAREELERK 82

Query: 211 IQEAK 225
            Q A+
Sbjct: 83  RQIAR 87


>SB_53232| Best HMM Match : OAR (HMM E-Value=0.92)
          Length = 806

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = +1

Query: 37  KELYTYSQNYKSISI*IPNRT--RDETKTSSRTKYVIKKSTDWSHSERQSLWKEYEIDYL 210
           K+ Y  ++N K   + I  R   R+ETK  SRT+  IKK+      + Q      E++  
Sbjct: 46  KDYYEKNRNKKIAQV-IERRKARREETKGKSRTRTEIKKAASKKRRKEQRATAREELERK 104

Query: 211 IQEAK 225
            Q A+
Sbjct: 105 RQIAR 109


>SB_49614| Best HMM Match : E-MAP-115 (HMM E-Value=0.85)
          Length = 838

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = +1

Query: 37  KELYTYSQNYKSISI*IPNRT--RDETKTSSRTKYVIKKSTDWSHSERQSLWKEYEIDYL 210
           K+ Y  ++N K   + I  R   R+ETK  SRT+  IKK+      + Q      E++  
Sbjct: 24  KDYYEKNRNKKIAQV-IERRKARREETKGKSRTRTEIKKAASKKRRKEQRATAREELERK 82

Query: 211 IQEAK 225
            Q A+
Sbjct: 83  RQIAR 87


>SB_40579| Best HMM Match : E-MAP-115 (HMM E-Value=0.85)
          Length = 929

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = +1

Query: 37  KELYTYSQNYKSISI*IPNRT--RDETKTSSRTKYVIKKSTDWSHSERQSLWKEYEIDYL 210
           K+ Y  ++N K   + I  R   R+ETK  SRT+  IKK+      + Q      E++  
Sbjct: 24  KDYYEKNRNKKIAQV-IERRKARREETKGKSRTRTEIKKAASKKRRKEQRATAREELERK 82

Query: 211 IQEAK 225
            Q A+
Sbjct: 83  RQIAR 87


>SB_26781| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 707

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = +1

Query: 37  KELYTYSQNYKSISI*IPNRT--RDETKTSSRTKYVIKKSTDWSHSERQSLWKEYEIDYL 210
           K+ Y  ++N K   + I  R   R+ETK  SRT+  IKK+      + Q      E++  
Sbjct: 24  KDYYEKNRNKKIAQV-IERRKARREETKGKSRTRTEIKKAASKKRRKEQRATAREELETK 82

Query: 211 IQEAK 225
            Q A+
Sbjct: 83  RQIAR 87


>SB_48968| Best HMM Match : Dehydrin (HMM E-Value=0.99)
          Length = 355

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = +1

Query: 37  KELYTYSQNYKSISI*IPNRT--RDETKTSSRTKYVIKKSTDWSHSERQSLWKEYEIDYL 210
           K+ Y  ++N K   + I  R   R+ETK  SRT+  IKK+      + Q      E++  
Sbjct: 24  KDYYEKNRNKKIAQV-IERRKARREETKGKSRTRTEIKKAASKKRRKEQRATAREELERK 82

Query: 211 IQEAK 225
            Q A+
Sbjct: 83  RQIAR 87


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,427,949
Number of Sequences: 59808
Number of extensions: 247322
Number of successful extensions: 713
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 752487277
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)