Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0200
         (412 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92773-1|CAB07131.1|  395|Caenorhabditis elegans Hypothetical pr...    29   0.99 
AF016654-1|AAB66028.1|  731|Caenorhabditis elegans Hypothetical ...    29   0.99 
Z81495-4|CAB04058.1|  171|Caenorhabditis elegans Hypothetical pr...    29   1.3  
AF303268-1|AAG50226.1|  171|Caenorhabditis elegans 2O123 protein.      29   1.3  
U50068-8|AAB37739.1|  865|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z79754-12|CAD57695.1|  440|Caenorhabditis elegans Hypothetical p...    28   2.3  
Z79754-11|CAB02100.1|  478|Caenorhabditis elegans Hypothetical p...    28   2.3  
Z79598-4|CAB01868.2|  745|Caenorhabditis elegans Hypothetical pr...    28   3.0  
U41271-3|AAP31439.1|  577|Caenorhabditis elegans Hypothetical pr...    28   3.0  
U41271-2|AAA82444.3|  713|Caenorhabditis elegans Hypothetical pr...    28   3.0  
AC006748-6|AAF60516.1|  582|Caenorhabditis elegans Hypothetical ...    27   5.3  
AC006748-5|AAX55685.1|  471|Caenorhabditis elegans Hypothetical ...    27   5.3  
AF039050-5|AAC47938.1|  499|Caenorhabditis elegans Cytochrome p4...    27   7.0  
Z99281-22|CAE18024.1|  181|Caenorhabditis elegans Hypothetical p...    26   9.2  
Z70309-6|CAA94360.1|  324|Caenorhabditis elegans Hypothetical pr...    26   9.2  
Z48582-5|CAA88467.3|  377|Caenorhabditis elegans Hypothetical pr...    26   9.2  
U52003-2|AAY43981.1|  554|Caenorhabditis elegans Hypothetical pr...    26   9.2  
AC024845-3|AAF60852.1|  619|Caenorhabditis elegans Hypothetical ...    26   9.2  

>Z92773-1|CAB07131.1|  395|Caenorhabditis elegans Hypothetical
           protein W08E3.3 protein.
          Length = 395

 Score = 29.5 bits (63), Expect = 0.99
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
 Frame = +1

Query: 94  RTRDETKTSSRTKYV-IKKSTDWSHSERQSLWKEYEID----YLIQEAKVLLYLV 243
           R  D+TK       V +KK  +     RQ LW E EI+    +L   AK ++YLV
Sbjct: 172 RANDKTKKIEYDTLVRVKKCLEEKKPVRQELWNEKEIEILNKHLFLTAKPIVYLV 226


>AF016654-1|AAB66028.1|  731|Caenorhabditis elegans Hypothetical
           protein C17A2.5 protein.
          Length = 731

 Score = 29.5 bits (63), Expect = 0.99
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 85  IPNRTRDETKTSSRTKYVIKKSTDWSHSERQSLWKEYEIDY 207
           IP+R  +    +  T+  IK +  W  ++R+SLW  Y  DY
Sbjct: 442 IPSRIENNNNKTKSTEDAIKMNHLWDLNDRKSLWVPY-CDY 481


>Z81495-4|CAB04058.1|  171|Caenorhabditis elegans Hypothetical
           protein F08G2.4 protein.
          Length = 171

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +1

Query: 112 KTSSRTKYVIKKSTDWSHSERQSLWKEYEIDYLIQEAKVLLYLV-LTFHCT 261
           K S +   + KK TDW+   ++  W E ++D L+++ +  L  + L   CT
Sbjct: 74  KASEKILELRKKLTDWNMDPKKRKWIEDDLDSLVRKQESALSRIRLAEKCT 124


>AF303268-1|AAG50226.1|  171|Caenorhabditis elegans 2O123 protein.
          Length = 171

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +1

Query: 112 KTSSRTKYVIKKSTDWSHSERQSLWKEYEIDYLIQEAKVLLYLV-LTFHCT 261
           K S +   + KK TDW+   ++  W E ++D L+++ +  L  + L   CT
Sbjct: 74  KASEKILELRKKLTDWNMDPKKRKWIEDDLDSLVRKQESALSRIRLAEKCT 124


>U50068-8|AAB37739.1|  865|Caenorhabditis elegans Hypothetical
           protein C01G5.8 protein.
          Length = 865

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 85  IPNRTRDETKTSSRTKYVIKKSTDWSHSERQS 180
           +P+ + D T+ S   + VIKKS +W +  R+S
Sbjct: 133 MPSESLDVTEISENIEKVIKKSPEWINHRRRS 164


>Z79754-12|CAD57695.1|  440|Caenorhabditis elegans Hypothetical
           protein F25H2.12b protein.
          Length = 440

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = +1

Query: 52  YSQNYKSISI*IPNRTRDETKTSSRTKYVIKKSTDWSHSERQSLWKEYEIDYLIQEA 222
           Y + ++      P    +E + S  T +   KST +  S++   W+  EIDYL++EA
Sbjct: 238 YHKEFQCFHFLRPENNENEREISENTSF--GKSTVFPLSKK---WENVEIDYLLREA 289


>Z79754-11|CAB02100.1|  478|Caenorhabditis elegans Hypothetical
           protein F25H2.12a protein.
          Length = 478

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = +1

Query: 52  YSQNYKSISI*IPNRTRDETKTSSRTKYVIKKSTDWSHSERQSLWKEYEIDYLIQEA 222
           Y + ++      P    +E + S  T +   KST +  S++   W+  EIDYL++EA
Sbjct: 276 YHKEFQCFHFLRPENNENEREISENTSF--GKSTVFPLSKK---WENVEIDYLLREA 327


>Z79598-4|CAB01868.2|  745|Caenorhabditis elegans Hypothetical
           protein C44H4.4 protein.
          Length = 745

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +1

Query: 127 TKYVIKKSTDWSHSERQSLWKEYEIDYLIQEAKVLLYLVLT 249
           TK++ + + D  H        +  +D+L   A++ LY+VLT
Sbjct: 673 TKFLDQLTLDMKHYNTNKPKSDVTVDFLASIARIRLYIVLT 713


>U41271-3|AAP31439.1|  577|Caenorhabditis elegans Hypothetical
           protein C46H3.2b protein.
          Length = 577

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
 Frame = -1

Query: 367 SPPTSFY----CLIKLKITNQPSQHPTKSHQSSIKTSDAKCN 254
           +PPT+ Y    CL  +K+ N  +   + S QSS     AKC+
Sbjct: 93  NPPTAMYSSSSCLYPVKVENHYASIGSSSSQSSSGFESAKCS 134


>U41271-2|AAA82444.3|  713|Caenorhabditis elegans Hypothetical
           protein C46H3.2a protein.
          Length = 713

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
 Frame = -1

Query: 367 SPPTSFY----CLIKLKITNQPSQHPTKSHQSSIKTSDAKCN 254
           +PPT+ Y    CL  +K+ N  +   + S QSS     AKC+
Sbjct: 229 NPPTAMYSSSSCLYPVKVENHYASIGSSSSQSSSGFESAKCS 270


>AC006748-6|AAF60516.1|  582|Caenorhabditis elegans Hypothetical
           protein Y39A3B.5a protein.
          Length = 582

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -2

Query: 135 ILCPGRSFRLISSSIWDLNRNTFIIL 58
           +L  G SF+ ++ S+W+ + NTFI L
Sbjct: 431 LLIAGDSFQSLNLSVWNSDINTFITL 456


>AC006748-5|AAX55685.1|  471|Caenorhabditis elegans Hypothetical
           protein Y39A3B.5c protein.
          Length = 471

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -2

Query: 135 ILCPGRSFRLISSSIWDLNRNTFIIL 58
           +L  G SF+ ++ S+W+ + NTFI L
Sbjct: 320 LLIAGDSFQSLNLSVWNSDINTFITL 345


>AF039050-5|AAC47938.1|  499|Caenorhabditis elegans Cytochrome p450
           family protein 34A8 protein.
          Length = 499

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 393 TDCTYACICLLQPPSIVSSNLKSQINQ 313
           T  T+AC+CLL  P +V   L+ ++ +
Sbjct: 315 TTLTWACVCLLNHPEVV-EKLRKELTE 340


>Z99281-22|CAE18024.1|  181|Caenorhabditis elegans Hypothetical
           protein Y57G11C.41 protein.
          Length = 181

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +1

Query: 346 NRRRLEETYTCISAV-CDITTS 408
           NR+ +EE  TC+  + CD+T S
Sbjct: 56  NRKSIEEVQTCVGVLHCDLTKS 77


>Z70309-6|CAA94360.1|  324|Caenorhabditis elegans Hypothetical
           protein R102.6 protein.
          Length = 324

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +2

Query: 248 HSIALCIRCFDARLVTLGWVLAWLICDFKFDETIE 352
           +++ L + CF+  ++++ W     ICDF     IE
Sbjct: 158 NTVLLFMICFEVYMLSVVWRAFVYICDFNMQRQIE 192


>Z48582-5|CAA88467.3|  377|Caenorhabditis elegans Hypothetical
           protein F27E5.5 protein.
          Length = 377

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +1

Query: 19  FISSNLKELYTYSQNYKSISI*IP 90
           F  ++L E+Y  S+N KSIS+ IP
Sbjct: 225 FKLTSLTEIYQISENVKSISLLIP 248


>U52003-2|AAY43981.1|  554|Caenorhabditis elegans Hypothetical
           protein ZK381.8 protein.
          Length = 554

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -1

Query: 148 IF*LHTLSGTKFSSHLEFYLGSK*KYFYNFVSMYK 44
           IF +H     +F  HL  YL S    F+N +  Y+
Sbjct: 225 IFMMHIHVANRFGGHLHIYLTSIIDSFFNLMKEYE 259


>AC024845-3|AAF60852.1|  619|Caenorhabditis elegans Hypothetical
           protein Y65B4BL.2 protein.
          Length = 619

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 15/51 (29%), Positives = 21/51 (41%)
 Frame = -2

Query: 411 NRCRYITDCTYACICLLQPPSIVSSNLKSQINQANTQPRVTNRASKHLMQS 259
           N CR        C   + PP I  S   S+   A T P  ++  S+  +QS
Sbjct: 535 NDCRRAATIMEVCSTAICPPLIAMSANSSRATSARTTPAGSSIGSRSSIQS 585


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,463,640
Number of Sequences: 27780
Number of extensions: 184746
Number of successful extensions: 565
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)