Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0200
         (412 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    25   0.25 
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   1.8  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   1.8  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   1.8  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   5.4  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   7.2  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   7.2  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    20   9.5  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    20   9.5  

>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 25.4 bits (53), Expect = 0.25
 Identities = 21/68 (30%), Positives = 33/68 (48%)
 Frame = +1

Query: 31  NLKELYTYSQNYKSISI*IPNRTRDETKTSSRTKYVIKKSTDWSHSERQSLWKEYEIDYL 210
           N+K+    S+ Y + S  + NRT D   TSSR     + S D +   R+   K+ + + L
Sbjct: 199 NIKKSGNESKKYATSSNSLRNRTHDFQHTSSRYSRERRCSRDRNREYRK---KDRQYEKL 255

Query: 211 IQEAKVLL 234
             E + LL
Sbjct: 256 HNEKEKLL 263


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +1

Query: 352 RRLEETYTCISAVCD 396
           RRL+ETY+ + A+C+
Sbjct: 209 RRLKETYSNMCALCE 223


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +1

Query: 352 RRLEETYTCISAVCD 396
           RRL+ETY+ + A+C+
Sbjct: 209 RRLKETYSNMCALCE 223


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +1

Query: 352 RRLEETYTCISAVCD 396
           RRL+ETY+ + A+C+
Sbjct: 209 RRLKETYSNMCALCE 223


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 361 EETYTCISAVCDIT 402
           EETY    A CD+T
Sbjct: 358 EETYALAPAGCDLT 371


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -2

Query: 117 SFRLISSSIWDLNRNT 70
           +FR++ +++ DL RNT
Sbjct: 402 NFRILGANVDDLMRNT 417


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = -1

Query: 373 YMSPPTSFYCLIKLKITNQPSQHPTKS 293
           +  P    YC  +L  TN P    TK+
Sbjct: 3   FKQPNRPSYCTWELNATNSPHTCRTKN 29


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 111 ENFVPDKVCN*KIYRLEP 164
           +NF+P+K  N   Y   P
Sbjct: 463 DNFLPEKTANRHYYAFVP 480


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -1

Query: 406 MSLYHRLHLCMYMSPPTSF 350
           +S+  ++    Y+ PPTSF
Sbjct: 366 VSIQEQIPRLRYIGPPTSF 384


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,432
Number of Sequences: 438
Number of extensions: 2043
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)