Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0200
(412 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g65740.1 68418.m08273 expressed protein 30 0.70
At5g18130.2 68418.m02128 expressed protein similar to unknown pr... 27 3.7
At5g18130.1 68418.m02129 expressed protein similar to unknown pr... 27 3.7
At1g72840.1 68414.m08425 disease resistance protein (TIR-NBS-LRR... 27 3.7
At4g11800.1 68417.m01879 calcineurin-like phosphoesterase family... 26 8.6
At4g03210.1 68417.m00440 xyloglucan:xyloglucosyl transferase, pu... 26 8.6
At3g07770.1 68416.m00947 heat shock protein-related strong simil... 26 8.6
At1g65810.1 68414.m07468 tRNA-splicing endonuclease positive eff... 26 8.6
At1g58200.2 68414.m06607 mechanosensitive ion channel domain-con... 26 8.6
At1g58200.1 68414.m06606 mechanosensitive ion channel domain-con... 26 8.6
>At5g65740.1 68418.m08273 expressed protein
Length = 216
Score = 29.9 bits (64), Expect = 0.70
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -3
Query: 233 SRTFASCMR*SISYSFQRLCLSEWLQSV 150
+RT +C S + SF LCL++WL+S+
Sbjct: 161 TRTDYTCENISCNKSFHSLCLTDWLRSI 188
>At5g18130.2 68418.m02128 expressed protein similar to unknown
protein (gb|AAF00631.1)
Length = 251
Score = 27.5 bits (58), Expect = 3.7
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +1
Query: 142 KKSTDWSHSERQSLWKE 192
KK DW ER +LWK+
Sbjct: 175 KKEVDWDEGERTNLWKK 191
>At5g18130.1 68418.m02129 expressed protein similar to unknown
protein (gb|AAF00631.1)
Length = 280
Score = 27.5 bits (58), Expect = 3.7
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +1
Query: 142 KKSTDWSHSERQSLWKE 192
KK DW ER +LWK+
Sbjct: 175 KKEVDWDEGERTNLWKK 191
>At1g72840.1 68414.m08425 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1183
Score = 27.5 bits (58), Expect = 3.7
Identities = 8/26 (30%), Positives = 18/26 (69%)
Frame = +1
Query: 136 VIKKSTDWSHSERQSLWKEYEIDYLI 213
++++ +DW S+++ LW EI Y++
Sbjct: 493 IVRQESDWRPSKQRFLWDPTEIHYVL 518
>At4g11800.1 68417.m01879 calcineurin-like phosphoesterase family
protein contains Pfam profile: PF00149 calcineurin-like
phosphoesterase
Length = 1012
Score = 26.2 bits (55), Expect = 8.6
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1
Query: 136 HTLSGTKFSSHLEFYLGS 83
H L G FS HLE +LG+
Sbjct: 710 HVLRGDSFSGHLESFLGT 727
>At4g03210.1 68417.m00440 xyloglucan:xyloglucosyl transferase,
putative / xyloglucan endotransglycosylase, putative /
endo-xyloglucan transferase, putative contains
similarity to xyloglucan endo-transglycosylase-like
protein (XET-1) GI:5070246 from [Medicago truncatula]
Length = 290
Score = 26.2 bits (55), Expect = 8.6
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +1
Query: 151 TDWSHSERQSLWKEYEID 204
TDWSH+ + +KE++ID
Sbjct: 204 TDWSHAPFVASYKEFQID 221
>At3g07770.1 68416.m00947 heat shock protein-related strong
similarity to heat-shock protein [Secale cereale]
GI:556673; contains Pfam profiles PF02518: ATPase,
histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein, PF00183: Hsp90 protein
Length = 803
Score = 26.2 bits (55), Expect = 8.6
Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +1
Query: 103 DETKTSSRTKYVIKKSTDWS-HSERQSLW 186
D+T+ +TK V+++ DW +E Q +W
Sbjct: 331 DQTEKKKKTKKVVERYWDWELTNETQPIW 359
>At1g65810.1 68414.m07468 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 1050
Score = 26.2 bits (55), Expect = 8.6
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = -2
Query: 411 NRCRYITDCTYACICLLQPPSIVSSNLKSQINQANTQPRVTNRASKHLMQ 262
+R RY + +CL P S++S + ++NQ N R N A+ +M+
Sbjct: 433 SRLRYDLHHQFTTLCLHLPTSLLSFRVAEKMNQTNNLLR--NIAASDVMR 480
>At1g58200.2 68414.m06607 mechanosensitive ion channel
domain-containing protein / MS ion channel
domain-containing protein contains Pfam profile PF00924:
Mechanosensitive ion channel
Length = 678
Score = 26.2 bits (55), Expect = 8.6
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -3
Query: 407 DVVISQTALMHVYVSSNLLLLSHQT*NHKSTKPTPNQESP 288
D+V +Q A+ Y+ + N KS P+P Q+SP
Sbjct: 474 DIVFNQAAMNRRYMLIEPSYKINSDDNSKSPSPSPGQKSP 513
>At1g58200.1 68414.m06606 mechanosensitive ion channel
domain-containing protein / MS ion channel
domain-containing protein contains Pfam profile PF00924:
Mechanosensitive ion channel
Length = 678
Score = 26.2 bits (55), Expect = 8.6
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -3
Query: 407 DVVISQTALMHVYVSSNLLLLSHQT*NHKSTKPTPNQESP 288
D+V +Q A+ Y+ + N KS P+P Q+SP
Sbjct: 474 DIVFNQAAMNRRYMLIEPSYKINSDDNSKSPSPSPGQKSP 513
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,736,517
Number of Sequences: 28952
Number of extensions: 165420
Number of successful extensions: 454
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 615542944
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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