Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0198
         (739 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00015B6099 Cluster: PREDICTED: similar to Mitochondr...    34   4.2  
UniRef50_UPI00015B464E Cluster: PREDICTED: hypothetical protein;...    33   7.3  
UniRef50_Q9M1V3 Cluster: Putative uncharacterized protein F16M2_...    33   9.7  
UniRef50_Q39477 Cluster: RNA polymerase sigma factor; n=1; Cyani...    33   9.7  
UniRef50_Q2UFI8 Cluster: Predicted protein; n=4; Trichocomaceae|...    33   9.7  

>UniRef50_UPI00015B6099 Cluster: PREDICTED: similar to Mitochondrial
           39S ribosomal protein L3; n=1; Nasonia vitripennis|Rep:
           PREDICTED: similar to Mitochondrial 39S ribosomal
           protein L3 - Nasonia vitripennis
          Length = 375

 Score = 33.9 bits (74), Expect = 4.2
 Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 10/87 (11%)
 Frame = -1

Query: 484 TLRRFTIVFITQSIL--YSNRRFKPW-----KSLCPPQLTKRE---IGSILRV*YSLPLT 335
           TL  FT+    + +L  Y  +RF PW     +      LTK     I +++R  Y LP  
Sbjct: 21  TLETFTLPNRGKKLLNPYPRKRFPPWFVKQTRVQHEEDLTKENKEFIQTVIRDKYPLPDI 80

Query: 334 GFFHFCPLPLRRRHHSGVWILHYRRIG 254
           GF    PL L        W  HY+R+G
Sbjct: 81  GFGSASPLKLETIEPVTEWKPHYQRVG 107


>UniRef50_UPI00015B464E Cluster: PREDICTED: hypothetical protein;
           n=1; Nasonia vitripennis|Rep: PREDICTED: hypothetical
           protein - Nasonia vitripennis
          Length = 67

 Score = 33.1 bits (72), Expect = 7.3
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 227 TSTGYPN-APPNTPIVQNPYATVMSPTKRQWTE 322
           TS  YPN  PP  P   NPYAT+  PT+ ++ +
Sbjct: 9   TSAPYPNYMPPPLPTTFNPYATMAFPTQGRYNQ 41


>UniRef50_Q9M1V3 Cluster: Putative uncharacterized protein
           F16M2_220; n=1; Arabidopsis thaliana|Rep: Putative
           uncharacterized protein F16M2_220 - Arabidopsis thaliana
           (Mouse-ear cress)
          Length = 1017

 Score = 32.7 bits (71), Expect = 9.7
 Identities = 19/42 (45%), Positives = 26/42 (61%)
 Frame = +1

Query: 520 LSSFPSLRCSTAECRDSPSVSPLHARFLILIY*SVTFIIDRL 645
           LSSFP+L  + A+ RD  S S LH+  + L Y S  FI++ L
Sbjct: 145 LSSFPALLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNAL 186


>UniRef50_Q39477 Cluster: RNA polymerase sigma factor; n=1;
           Cyanidium caldarium|Rep: RNA polymerase sigma factor -
           Cyanidium caldarium
          Length = 609

 Score = 32.7 bits (71), Expect = 9.7
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -1

Query: 505 CNECVPATLRRFTIVFITQSILYSNRRFKPWKSLCPPQLTKRE 377
           CN CV   L +  ++F+ Q    ++ RF+  +  CP   ++ E
Sbjct: 31  CNSCVSLVLVKSRVLFVVQQASSADNRFRAQRLFCPKYCSRTE 73


>UniRef50_Q2UFI8 Cluster: Predicted protein; n=4;
           Trichocomaceae|Rep: Predicted protein - Aspergillus
           oryzae
          Length = 1548

 Score = 32.7 bits (71), Expect = 9.7
 Identities = 23/75 (30%), Positives = 36/75 (48%)
 Frame = +2

Query: 227 TSTGYPNAPPNTPIVQNPYATVMSPTKRQWTEMEEPGKWQRILDT*NTSNFSFG*LRWTE 406
           T+    N PP TPI    +A+  SP+ R       PG W R     + S++S G ++  +
Sbjct: 234 TTINTQNLPPPTPI----FASASSPSTRY---SGSPGMWSRTSTPTSLSSYSPGIVQPAK 286

Query: 407 ALPRLEPTVAVKDRL 451
           A+PR+      + RL
Sbjct: 287 AVPRIRQPSPSQTRL 301


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 683,589,391
Number of Sequences: 1657284
Number of extensions: 14025515
Number of successful extensions: 35740
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 34422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35726
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60088620670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)