Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0198
         (739 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    25   0.84 
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    23   1.9  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    23   2.6  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    22   4.5  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   7.9  

>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = -1

Query: 400 PPQLTKREIGSILRV*YSLPLTGFFHFC--PLPLRRRHHSGVWILHYR 263
           PPQL   E    L    ++P   F+ +C  P P+  +  SG   ++Y+
Sbjct: 232 PPQLEVNERKENLTCQPAVPYVPFYRYCYRPYPVYNQWWSGPLSMYYQ 279


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +2

Query: 251 PPNTPI-VQNPYATVMSPTKRQWTEMEEPGK 340
           PPNT      P   +MSPT+    ++ + GK
Sbjct: 226 PPNTENNCAQPVVVIMSPTRELAIQIADQGK 256


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/13 (69%), Positives = 10/13 (76%), Gaps = 1/13 (7%)
 Frame = +2

Query: 503 ATFIP-HYPPSPP 538
           AT +P HYPP PP
Sbjct: 155 ATSLPLHYPPPPP 167


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +1

Query: 481 VSQVHTHCNIHPPLSSFPSLRCSTAECRDSPSV 579
           V QV TH ++ P   +FP+      E   +P++
Sbjct: 684 VLQVGTHADLPPVPPNFPTCGDHVPEINSNPNL 716



 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -1

Query: 457 ITQSILYSNRRFKPWKSLCPPQLT 386
           IT    Y  R    + S+CP QLT
Sbjct: 338 ITPGRRYRFRMINSFASVCPAQLT 361


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -1

Query: 457 ITQSILYSNRRFKPWKSLCPPQLT 386
           IT    Y  R    + S+CP QLT
Sbjct: 338 ITPGRRYRFRMINSFASVCPAQLT 361


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,411
Number of Sequences: 336
Number of extensions: 3923
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19779950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)