Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0198
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    28   1.6  
SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces pombe...    27   3.7  
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    26   6.4  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    25   8.5  
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi...    25   8.5  
SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   8.5  

>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 239 YPNAPPNTPIVQNP-YATVMSPTKRQWTEMEEP 334
           YPNAP +   V NP  +    PT+R + + E+P
Sbjct: 413 YPNAPTSAVSVHNPTISDEAEPTERAFLKKEKP 445


>SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 548

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -3

Query: 461 LHNPIYPLQQPSVQAVEEPLSTAVNQKRNWKYSTCLIFFA 342
           L N +Y L   +VQ    P+   ++++R WK      FF+
Sbjct: 200 LSNALYALD--NVQTYMRPIFQGIDKRRGWKLDCTFSFFS 237


>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 18/57 (31%), Positives = 24/57 (42%)
 Frame = +2

Query: 191 IFVATFNFFVYSTSTGYPNAPPNTPIVQNPYATVMSPTKRQWTEMEEPGKWQRILDT 361
           +FVA  N    S  + + N P   P+VQN      S    Q+T         R+LDT
Sbjct: 291 LFVADLNSNASSNFSLWHNEPLAEPVVQNVLWVNTSSVLVQFTNRNSTCITARLLDT 347


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +2

Query: 209 NFFVYSTSTGYPNAPPNTPIVQNPYATVMSPTKRQ 313
           N F +  +TG  +  P  P +   ++T  +PTK++
Sbjct: 66  NTFAHHNTTGSNSVGPKKPFLDYHHSTSNTPTKKK 100


>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
           Ran1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 470

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +2

Query: 236 GYPNAPPNTPIVQNPYATVMSPTKR 310
           GYPN PP TPI    +    +P  R
Sbjct: 434 GYPNQPPLTPIPFTGFVLHPAPVGR 458


>SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 266

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 287 TVMSPTKRQWTEMEE 331
           T+M   +R WTEMEE
Sbjct: 56  TIMCEQRRSWTEMEE 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,906,167
Number of Sequences: 5004
Number of extensions: 60858
Number of successful extensions: 162
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)