Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0198
         (739 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0139 - 11139004-11139031,11139300-11141017,11141408-111414...    29   5.1  
05_04_0199 + 18980017-18980759,18981478-18981532                       28   8.9  
03_02_0312 - 7326092-7326148,7326415-7326540,7327744-7327821,732...    28   8.9  

>10_06_0139 -
           11139004-11139031,11139300-11141017,11141408-11141477,
           11142520-11143361
          Length = 885

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 235 RLPKRSAQYAYSAKSIRHCDVSYEEAVDRNGR 330
           RLPKR  ++    K +    +  EEA++R+GR
Sbjct: 119 RLPKRLKRHQQMGKMVSQFRIYVEEAIERHGR 150


>05_04_0199 + 18980017-18980759,18981478-18981532
          Length = 265

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +1

Query: 505 NIHPPLSSFPSLRCSTAECRDSPSVSPLHARFLILIY*SVTFII 636
           +++PP    P    S++ CR +PS + L    L+L+  SV F++
Sbjct: 48  SVYPP----PPSSSSSSACRHTPSSATLDLLILLLVLFSVAFLL 87


>03_02_0312 -
           7326092-7326148,7326415-7326540,7327744-7327821,
           7327916-7328178,7328699-7328741,7329581-7329632,
           7329705-7329871,7330135-7330194,7330291-7330374,
           7330654-7330758,7330840-7330899,7330976-7331032
          Length = 383

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +2

Query: 221 YSTSTGYPNAPPNTPIV-QNPYATVMSPTKRQWTEMEEPGKWQR 349
           Y  +   P + P  P   Q+P  TV +PT    TE ++ GK +R
Sbjct: 95  YQQAPMLPGSHPYNPYPGQSPNGTVQTPTSAGGTETDKSGKSKR 138


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,489,265
Number of Sequences: 37544
Number of extensions: 400361
Number of successful extensions: 1081
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1081
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)