Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0198
         (739 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55833| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_17129| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-07)                 28   6.9  
SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)         28   6.9  
SB_44454| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  

>SB_55833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 433

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +2

Query: 218 VYSTSTGYPNAPPNTPIVQNPYATVMSPTKRQWTEMEEPGKW 343
           + + S G+P++P N+  +    A +    K +W     PG+W
Sbjct: 110 IITASGGFPSSPTNSQYMARTDARIDVLNKAKWFRFPYPGQW 151


>SB_17129| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-07)
          Length = 350

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/40 (32%), Positives = 25/40 (62%)
 Frame = -2

Query: 420 SRGRASVHRS*PKEKLEVFYVSNILCHLPGSSISVHCLFV 301
           S GR +V  +     L +  V+++LC+LP S+I +H +++
Sbjct: 187 SNGRQNVSNTKLAVTLFLVTVASLLCYLPFSAILIHFIWI 226


>SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)
          Length = 1692

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +2

Query: 224 STSTGYPNAPPNTPIVQNPYATVMSP 301
           S +TGYP A P  P     Y TV  P
Sbjct: 362 SANTGYPTATPRYPPASTGYPTVTHP 387


>SB_44454| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 728

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +2

Query: 251 PPNTPIVQNPYATVMSPTKRQWTEMEEPGKW 343
           P   PI+ + + ++    K+Q  ++E+P KW
Sbjct: 131 PNGIPIIHSSFKSIKPSIKKQAPQLEQPFKW 161


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,552,182
Number of Sequences: 59808
Number of extensions: 456430
Number of successful extensions: 1080
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1079
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)