Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0198
(739 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z97652-1|CAM26430.1| 1462|Homo sapiens intraflagellar transport ... 30 10.0
Z97633-1|CAM26352.1| 1462|Homo sapiens intraflagellar transport ... 30 10.0
U79716-1|AAC51105.1| 3460|Homo sapiens reelin protein. 30 10.0
BC035577-1|AAH35577.1| 1462|Homo sapiens intraflagellar transpor... 30 10.0
AL133297-1|CAM26447.1| 1462|Homo sapiens intraflagellar transpor... 30 10.0
AL031719-1|CAM26410.1| 1462|Homo sapiens intraflagellar transpor... 30 10.0
AL031705-1|CAM26342.1| 1462|Homo sapiens intraflagellar transpor... 30 10.0
AE006467-11|AAK61285.1| 1462|Homo sapiens KIAA0590 protein. 30 10.0
AC006316-1|AAD29127.1| 2126|Homo sapiens unknown protein. 30 10.0
AB209020-1|BAD92257.1| 600|Homo sapiens KIAA0590 gene product v... 30 10.0
AB011162-1|BAA25516.2| 1468|Homo sapiens KIAA0590 protein protein. 30 10.0
>Z97652-1|CAM26430.1| 1462|Homo sapiens intraflagellar transport 140
homolog (Chlamydomonas) protein.
Length = 1462
Score = 29.9 bits (64), Expect = 10.0
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -1
Query: 592 REEVIQKGCHDTQQYYSARRGRRIMGDECCNECVPATLRRFTIVFIT 452
RE+ ++ GCH Q S R R +G E C++ + F+ F+T
Sbjct: 739 REDEVEPGCHHIPQMVSRRPLRDFVGLEDCDKATRDAMLHFSF-FVT 784
>Z97633-1|CAM26352.1| 1462|Homo sapiens intraflagellar transport 140
homolog (Chlamydomonas) protein.
Length = 1462
Score = 29.9 bits (64), Expect = 10.0
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -1
Query: 592 REEVIQKGCHDTQQYYSARRGRRIMGDECCNECVPATLRRFTIVFIT 452
RE+ ++ GCH Q S R R +G E C++ + F+ F+T
Sbjct: 739 REDEVEPGCHHIPQMVSRRPLRDFVGLEDCDKATRDAMLHFSF-FVT 784
>U79716-1|AAC51105.1| 3460|Homo sapiens reelin protein.
Length = 3460
Score = 29.9 bits (64), Expect = 10.0
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = -1
Query: 565 HDTQQYYSARRGRRIMGDECCNECVPATLRRFTIVFITQSILYSNRRFKPWKSL 404
H Q YS G+ ECVP T+ + T+S +Y++ RF+ WK +
Sbjct: 1680 HSVQLQYSLNNGKD--WHLVTEECVPPTIG---CLHYTESSIYTSERFQNWKRI 1728
>BC035577-1|AAH35577.1| 1462|Homo sapiens intraflagellar transport
140 homolog (Chlamydomonas) protein.
Length = 1462
Score = 29.9 bits (64), Expect = 10.0
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -1
Query: 592 REEVIQKGCHDTQQYYSARRGRRIMGDECCNECVPATLRRFTIVFIT 452
RE+ ++ GCH Q S R R +G E C++ + F+ F+T
Sbjct: 739 REDEVEPGCHHIPQMVSRRPLRDFVGLEDCDKATRDAMLHFSF-FVT 784
>AL133297-1|CAM26447.1| 1462|Homo sapiens intraflagellar transport
140 homolog (Chlamydomonas) protein.
Length = 1462
Score = 29.9 bits (64), Expect = 10.0
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -1
Query: 592 REEVIQKGCHDTQQYYSARRGRRIMGDECCNECVPATLRRFTIVFIT 452
RE+ ++ GCH Q S R R +G E C++ + F+ F+T
Sbjct: 739 REDEVEPGCHHIPQMVSRRPLRDFVGLEDCDKATRDAMLHFSF-FVT 784
>AL031719-1|CAM26410.1| 1462|Homo sapiens intraflagellar transport
140 homolog (Chlamydomonas) protein.
Length = 1462
Score = 29.9 bits (64), Expect = 10.0
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -1
Query: 592 REEVIQKGCHDTQQYYSARRGRRIMGDECCNECVPATLRRFTIVFIT 452
RE+ ++ GCH Q S R R +G E C++ + F+ F+T
Sbjct: 739 REDEVEPGCHHIPQMVSRRPLRDFVGLEDCDKATRDAMLHFSF-FVT 784
>AL031705-1|CAM26342.1| 1462|Homo sapiens intraflagellar transport
140 homolog (Chlamydomonas) protein.
Length = 1462
Score = 29.9 bits (64), Expect = 10.0
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -1
Query: 592 REEVIQKGCHDTQQYYSARRGRRIMGDECCNECVPATLRRFTIVFIT 452
RE+ ++ GCH Q S R R +G E C++ + F+ F+T
Sbjct: 739 REDEVEPGCHHIPQMVSRRPLRDFVGLEDCDKATRDAMLHFSF-FVT 784
>AE006467-11|AAK61285.1| 1462|Homo sapiens KIAA0590 protein.
Length = 1462
Score = 29.9 bits (64), Expect = 10.0
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -1
Query: 592 REEVIQKGCHDTQQYYSARRGRRIMGDECCNECVPATLRRFTIVFIT 452
RE+ ++ GCH Q S R R +G E C++ + F+ F+T
Sbjct: 739 REDEVEPGCHHIPQMVSRRPLRDFVGLEDCDKATRDAMLHFSF-FVT 784
>AC006316-1|AAD29127.1| 2126|Homo sapiens unknown protein.
Length = 2126
Score = 29.9 bits (64), Expect = 10.0
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = -1
Query: 565 HDTQQYYSARRGRRIMGDECCNECVPATLRRFTIVFITQSILYSNRRFKPWKSL 404
H Q YS G+ ECVP T+ + T+S +Y++ RF+ WK +
Sbjct: 1250 HSVQLQYSLNNGKD--WHLVTEECVPPTIG---CLHYTESSIYTSERFQNWKRI 1298
>AB209020-1|BAD92257.1| 600|Homo sapiens KIAA0590 gene product
variant protein.
Length = 600
Score = 29.9 bits (64), Expect = 10.0
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -1
Query: 592 REEVIQKGCHDTQQYYSARRGRRIMGDECCNECVPATLRRFTIVFIT 452
RE+ ++ GCH Q S R R +G E C++ + F+ F+T
Sbjct: 446 REDEVEPGCHHIPQMVSRRPLRDFVGLEDCDKATRDAMLHFSF-FVT 491
>AB011162-1|BAA25516.2| 1468|Homo sapiens KIAA0590 protein protein.
Length = 1468
Score = 29.9 bits (64), Expect = 10.0
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -1
Query: 592 REEVIQKGCHDTQQYYSARRGRRIMGDECCNECVPATLRRFTIVFIT 452
RE+ ++ GCH Q S R R +G E C++ + F+ F+T
Sbjct: 745 REDEVEPGCHHIPQMVSRRPLRDFVGLEDCDKATRDAMLHFSF-FVT 790
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,988,468
Number of Sequences: 237096
Number of extensions: 2270571
Number of successful extensions: 5263
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5262
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8791154398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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