Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0198
         (739 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical pr...    28   6.0  
AF040654-7|AAK21450.2|  362|Caenorhabditis elegans Hypothetical ...    28   7.9  

>U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical protein
            F54D11.2 protein.
          Length = 1145

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +2

Query: 242  PNAPPNTPIVQNPYATVMS 298
            P  PP  PI+QNP AT MS
Sbjct: 1102 PPPPPPLPILQNPVATPMS 1120


>AF040654-7|AAK21450.2|  362|Caenorhabditis elegans Hypothetical
           protein R06B10.3 protein.
          Length = 362

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 206 FNFFVYSTSTGYPNAPPNTP 265
           + FF Y  + G P  PPNTP
Sbjct: 143 YPFFCYGPALGAPTNPPNTP 162


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,261,742
Number of Sequences: 27780
Number of extensions: 350474
Number of successful extensions: 869
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)