Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0198
         (739 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g63370.1 68416.m07133 pentatricopeptide (PPR) repeat-containi...    33   0.26 
At5g24110.1 68418.m02833 WRKY family transcription factor              29   4.3  
At1g56440.1 68414.m06491 serine/threonine protein phosphatase-re...    28   5.6  

>At3g63370.1 68416.m07133 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 1017

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 19/42 (45%), Positives = 26/42 (61%)
 Frame = +1

Query: 520 LSSFPSLRCSTAECRDSPSVSPLHARFLILIY*SVTFIIDRL 645
           LSSFP+L  + A+ RD  S S LH+  + L Y S  FI++ L
Sbjct: 145 LSSFPALLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNAL 186


>At5g24110.1 68418.m02833 WRKY family transcription factor
          Length = 303

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 487 QVHTHCNIHPPLSSFPSLRCSTA 555
           Q H H N+H PLSS P+L  + A
Sbjct: 211 QAHLHHNLHYPLSSTPNLENNNA 233


>At1g56440.1 68414.m06491 serine/threonine protein
           phosphatase-related similar to SP|Q60676
           Serine/threonine protein phosphatase 5 (EC 3.1.3.16)
           (PP5) (Protein phosphatase T) (PPT) Mus musculus,
           Tetratricopeptide Repeats Of Protein Phosphatase 5 [Homo
           sapiens] GI:3212250; contains Pfam profile: PF00515: TPR
           Domain
          Length = 476

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -3

Query: 689 IAISYIENVTKFFNFNLSIMNVT 621
           +A+ YIEN+TK   FN+ +M +T
Sbjct: 415 LAVKYIENLTKVPRFNMLVMCLT 437


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,031,039
Number of Sequences: 28952
Number of extensions: 318627
Number of successful extensions: 815
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)