Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0197
         (668 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    36   0.67 
UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    36   0.67 
UniRef50_A7S854 Cluster: Predicted protein; n=4; Nematostella ve...    33   4.7  
UniRef50_Q0P6N7 Cluster: Plasma memebrane H+-ATPase; n=1; Planta...    33   8.2  

>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 36.3 bits (80), Expect = 0.67
 Identities = 13/17 (76%), Positives = 14/17 (82%)
 Frame = +2

Query: 608 AGWWYLPVRTPKRSYHQ 658
           A WWYLP RT KRSYH+
Sbjct: 569 AEWWYLPARTHKRSYHR 585


>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 36.3 bits (80), Expect = 0.67
 Identities = 16/19 (84%), Positives = 18/19 (94%)
 Frame = +1

Query: 43  FLLLRFVDELTDHLVLTGY 99
           FLLLR+VDELT HLVL+GY
Sbjct: 154 FLLLRWVDELTAHLVLSGY 172



 Score = 33.5 bits (73), Expect = 4.7
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = +2

Query: 482 PIDIYNVNAPPTSRYKF 532
           P  +Y+VNAPPTSRYKF
Sbjct: 175 PRHLYDVNAPPTSRYKF 191



 Score = 33.1 bits (72), Expect = 6.2
 Identities = 15/19 (78%), Positives = 17/19 (89%)
 Frame = +3

Query: 429 IR*MDELTAHLVLSGY*SP 485
           +R +DELTAHLVLSGY SP
Sbjct: 157 LRWVDELTAHLVLSGYWSP 175


>UniRef50_A7S854 Cluster: Predicted protein; n=4; Nematostella
            vectensis|Rep: Predicted protein - Nematostella vectensis
          Length = 1851

 Score = 33.5 bits (73), Expect = 4.7
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = -2

Query: 190  WGSRCNYTETLKLISQGGLTAFTL*MSTGSGNQLTPS 80
            W +  N+T+T  + + GG  +FTL MS  SGN + P+
Sbjct: 1393 WKAHSNFTQTSLVGAYGGNLSFTLHMSNQSGNTIGPN 1429


>UniRef50_Q0P6N7 Cluster: Plasma memebrane H+-ATPase; n=1;
          Plantago major|Rep: Plasma memebrane H+-ATPase -
          Plantago major (Common plantain)
          Length = 106

 Score = 32.7 bits (71), Expect = 8.2
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = +1

Query: 1  VDPPGCRNSARGKDFLLLR 57
          VDPPGCRNSARG   +  R
Sbjct: 14 VDPPGCRNSARGPGIICWR 32


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 700,756,568
Number of Sequences: 1657284
Number of extensions: 13871726
Number of successful extensions: 25695
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 24627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25690
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 51239674196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)