Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0197
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    27   3.2  
SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual     26   4.3  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    26   5.6  
SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|...    26   5.6  
SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual    26   5.6  
SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac...    25   7.5  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    25   9.9  

>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -2

Query: 454 AVSSSIHLIYKKKKKNNHATSLLAFPIIYPDNI 356
           A +SS  +IY  KKKN H+  LL  P    D I
Sbjct: 262 ARTSSGKIIYFPKKKNRHSDGLLLQPKRLADEI 294


>SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 435

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +3

Query: 66  RAHRPLGVNWLPEPVDIYNVNAVNPP*DISF 158
           R +  LG  + PE VD Y V  V P   ISF
Sbjct: 403 RIYASLGYRFSPEEVDFYYVRKVAPNKVISF 433


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -1

Query: 173 LY*DLKTYISRWVDGIYVVDVYGLR*PVNTKWSVSSSTNLSNKKSFPRAE 24
           LY     ++ R+VDG  V D   ++    T WS S    L+ K S  +AE
Sbjct: 667 LYTMATCHMLRYVDGELVGDPLDIKMFKFTHWSYSEENFLNKKMSSEQAE 716


>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
           Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 137 VDGIYVVDVYGLR*PVNTKWSVSSS 63
           +DG + +DV+  R P N KWS S +
Sbjct: 69  IDG-HSIDVHNERDPANIKWSASGA 92


>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 592 SSYAFRFEGWGSRCNYTETLELIS 521
           SSY F FE +G+R    E L +IS
Sbjct: 133 SSYKFTFETFGTRRTMKEQLSIIS 156


>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 621 YHHPAYFRREAVMRFGS 571
           Y HP  FR  AV+ FGS
Sbjct: 249 YFHPHRFRSRAVLEFGS 265


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 440 GRAHSPPGVKWLLKPIDIYN 499
           G  H P  V WLL+P DIY+
Sbjct: 236 GPLHDPNTVMWLLRP-DIYS 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,853,416
Number of Sequences: 5004
Number of extensions: 57933
Number of successful extensions: 94
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)