Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0197
         (668 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3235| Best HMM Match : Laminin_EGF (HMM E-Value=3.6e-13)            32   0.49 
SB_26639| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.85 
SB_12056| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_56430| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_54757| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_47635| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_43613| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_43412| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_31108| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_8174| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.6  
SB_4560| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.6  
SB_21994| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_44994| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_34680| Best HMM Match : WD40 (HMM E-Value=4.5e-07)                  29   4.5  
SB_45813| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_50032| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_38562| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_19926| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_25921| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_46352| Best HMM Match : L71 (HMM E-Value=0.19)                      28   7.9  
SB_40500| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_21779| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_9975| Best HMM Match : 7tm_2 (HMM E-Value=1.9e-38)                  28   7.9  

>SB_3235| Best HMM Match : Laminin_EGF (HMM E-Value=3.6e-13)
          Length = 170

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -2

Query: 190 WGSRCNYTETLKLISQGGLTAFTL*MSTGSGNQLTPS 80
           W +  N+T+T  + + GG  +FTL +S  SGN + P+
Sbjct: 46  WKAHSNFTQTSLVGAYGGNLSFTLHISNQSGNTIGPN 82


>SB_26639| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 287

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = +1

Query: 1   VDPPGCRNSARGKDFLLLR 57
           VDPPGCRNS   ++++LLR
Sbjct: 92  VDPPGCRNSMIYENYILLR 110


>SB_12056| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 119

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = +1

Query: 1   VDPPGCRNSARGKD 42
           VDPPGCRNS  GK+
Sbjct: 92  VDPPGCRNSIAGKN 105


>SB_56430| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -2

Query: 64 PQT*AIKNLSLVPNSCSPGDP 2
          P + +  ++SL+ NSCSPGDP
Sbjct: 23 PPSRSTVSISLISNSCSPGDP 43


>SB_54757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -2

Query: 64 PQT*AIKNLSLVPNSCSPGDP 2
          P + +  ++SL+ NSCSPGDP
Sbjct: 23 PPSRSTVSISLISNSCSPGDP 43


>SB_47635| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -2

Query: 64 PQT*AIKNLSLVPNSCSPGDP 2
          P + +  ++SL+ NSCSPGDP
Sbjct: 23 PPSRSTVSISLISNSCSPGDP 43


>SB_43613| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -2

Query: 64 PQT*AIKNLSLVPNSCSPGDP 2
          P + +  ++SL+ NSCSPGDP
Sbjct: 23 PPSRSTVSISLISNSCSPGDP 43


>SB_43412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -2

Query: 64 PQT*AIKNLSLVPNSCSPGDP 2
          P + +  ++SL+ NSCSPGDP
Sbjct: 23 PPSRSTVSISLISNSCSPGDP 43


>SB_31108| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -2

Query: 64 PQT*AIKNLSLVPNSCSPGDP 2
          P + +  ++SL+ NSCSPGDP
Sbjct: 23 PPSRSTVSISLISNSCSPGDP 43


>SB_8174| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -2

Query: 64 PQT*AIKNLSLVPNSCSPGDP 2
          P + +  ++SL+ NSCSPGDP
Sbjct: 23 PPSRSTVSISLISNSCSPGDP 43


>SB_4560| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -2

Query: 64 PQT*AIKNLSLVPNSCSPGDP 2
          P + +  ++SL+ NSCSPGDP
Sbjct: 21 PPSRSTVSISLISNSCSPGDP 41


>SB_21994| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 159

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/14 (71%), Positives = 13/14 (92%)
 Frame = -2

Query: 43 NLSLVPNSCSPGDP 2
          ++SL+ NSCSPGDP
Sbjct: 31 SISLISNSCSPGDP 44


>SB_44994| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 182

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = +1

Query: 1   VDPPGCRNS---ARGKDFLLLRFVDELTDHLVLTGYR 102
           VDPPGCRNS    R + F   R +D++    VLT YR
Sbjct: 16  VDPPGCRNSMLPKRTEGFAWGRSIDKVLGGHVLT-YR 51


>SB_34680| Best HMM Match : WD40 (HMM E-Value=4.5e-07)
          Length = 454

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/16 (68%), Positives = 15/16 (93%)
 Frame = +3

Query: 288 KMYLLQIPNAIKVFIL 335
           K+YLL IPNA+KV++L
Sbjct: 435 KIYLLPIPNALKVYLL 450


>SB_45813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 146

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -1

Query: 74 VSSSTNLSNKKSFPRAEFLQPGGS 3
          +S++ +  + K++P  EFLQPGGS
Sbjct: 9  ISANIHCVDVKAYPCIEFLQPGGS 32


>SB_50032| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = -2

Query: 40 LSLVPNSCSPGDP 2
          +SL+ NSCSPGDP
Sbjct: 31 VSLISNSCSPGDP 43


>SB_38562| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 1  VDPPGCRNSARGKDFLLLRFVDEL 72
          VDPPGCRNS   +    + F+D+L
Sbjct: 16 VDPPGCRNSIINRFSKDIGFMDDL 39


>SB_19926| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 213

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/14 (78%), Positives = 11/14 (78%)
 Frame = -2

Query: 43  NLSLVPNSCSPGDP 2
           NL L  NSCSPGDP
Sbjct: 85  NLLLTSNSCSPGDP 98


>SB_25921| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = -2

Query: 40 LSLVPNSCSPGDP 2
          L L+ NSCSPGDP
Sbjct: 35 LDLISNSCSPGDP 47


>SB_46352| Best HMM Match : L71 (HMM E-Value=0.19)
          Length = 179

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +1

Query: 1  VDPPGCRNSARGK 39
          VDPPGCRNS + K
Sbjct: 16 VDPPGCRNSIKDK 28


>SB_40500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 92

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/12 (83%), Positives = 10/12 (83%)
 Frame = +1

Query: 1  VDPPGCRNSARG 36
          VDPPGCRNS  G
Sbjct: 16 VDPPGCRNSIEG 27


>SB_21779| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -2

Query: 49 IKNLSLVPNSCSPGDP 2
          +K +S V NSCSPGDP
Sbjct: 11 LKFVSKVSNSCSPGDP 26


>SB_9975| Best HMM Match : 7tm_2 (HMM E-Value=1.9e-38)
          Length = 1101

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 49  IKNLSLVPNSCSPGDP 2
           + +L L  NSCSPGDP
Sbjct: 656 LNSLQLASNSCSPGDP 671


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,554,630
Number of Sequences: 59808
Number of extensions: 432611
Number of successful extensions: 2161
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 2124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2160
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)