Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0196
         (669 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1689 + 39204726-39205131,39208214-39208602,39208686-392088...    29   2.5  
04_04_0328 + 24441747-24442073,24442205-24442327,24442947-244430...    29   3.3  
02_04_0533 + 23719353-23719910,23720012-23720418,23720690-23721023     29   4.4  
10_08_0950 + 21764902-21765912                                         28   7.7  
06_01_0375 + 2699179-2699264,2699697-2699786,2699913-2699991,270...    28   7.7  
01_07_0203 - 41968071-41968154,41969499-41969858,41969946-41970248     28   7.7  

>01_06_1689 +
           39204726-39205131,39208214-39208602,39208686-39208820,
           39208936-39209001,39209150-39209218,39209402-39209455
          Length = 372

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = +1

Query: 148 IQMYLSKLQDLVPFMPKNRKISKLEVIQHVIDYICDLQSALE 273
           I   L KLQDLVP M K    S  +++   + YI +LQ  +E
Sbjct: 316 ISKRLKKLQDLVPNMDKQTNTS--DMLDIAVTYIKELQGQVE 355


>04_04_0328 +
           24441747-24442073,24442205-24442327,24442947-24443012,
           24443155-24443223,24443263-24443307
          Length = 209

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = +1

Query: 160 LSKLQDLVPFMPKNRKISKLEVIQHVIDYICDLQSALEN 276
           L KLQ LVP M K    S  +++   +D+I  LQS L+N
Sbjct: 160 LRKLQALVPNMDKQTSTS--DMLDLAVDHIKGLQSQLQN 196


>02_04_0533 + 23719353-23719910,23720012-23720418,23720690-23721023
          Length = 432

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 119 SDTGMAKTLRYKCTSRSSRISYPSCPRIER 208
           +DT +    RYKCT+   R SY    R+ER
Sbjct: 335 ADTFVEHFTRYKCTTAGERKSYGCMQRLER 364


>10_08_0950 + 21764902-21765912
          Length = 336

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +1

Query: 535 AASVAMGGSRRLGEQKPPNFSSSEDHLSMISYVRSRYD 648
           AA+V+ GG+   G + PP   + E+ L++I   R R++
Sbjct: 33  AAAVSSGGAGGSGRRLPPPCWTHEETLALIEAYRDRWE 70


>06_01_0375 +
           2699179-2699264,2699697-2699786,2699913-2699991,
           2700816-2700893,2701290-2701338,2702183-2702232,
           2702704-2702853,2703437-2703517,2703593-2703609,
           2705804-2705893,2706033-2706111,2706234-2706311,
           2707554-2707687,2707858-2707936,2708108-2708188,
           2708263-2708400
          Length = 452

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +1

Query: 100 IASGRVQRHRDGENAEIQMYLSKLQDLVPFMPKNRKISKLEVIQHVID--YICDLQSAL 270
           I   RV    D   A I+ + +  +DLV    +   +  LEVI+HV +    C+  SAL
Sbjct: 104 IKIARVHAASDPSTASIEYFCTTAEDLVKENKQFDAVISLEVIEHVANPSGFCESLSAL 162


>01_07_0203 - 41968071-41968154,41969499-41969858,41969946-41970248
          Length = 248

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +1

Query: 127 RDGENAEIQMYLSKLQDLVPFMPKNRKISKLEVIQHVIDYICDLQSALEN 276
           RD      ++Y S L+ L+P     +K+S    +  V+ YI +LQ  +EN
Sbjct: 78  RDRRKQLNELY-SSLRALLPDADHTKKLSIPTTVSRVLKYIPELQKQVEN 126


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,740,667
Number of Sequences: 37544
Number of extensions: 358738
Number of successful extensions: 1221
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1218
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)