Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0196
         (669 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ383819-1|ABD38144.1|  377|Anopheles gambiae abdominal-B protein.     27   0.53 
AF395079-1|AAK97461.1|  371|Anopheles gambiae basic helix-loop-h...    26   1.2  
AF444780-1|AAL37901.1| 1152|Anopheles gambiae Toll protein.            24   5.0  

>DQ383819-1|ABD38144.1|  377|Anopheles gambiae abdominal-B protein.
          Length = 377

 Score = 27.1 bits (57), Expect = 0.53
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +3

Query: 351 PSEETARPSPYAQHHPPQITLHTRTQKSNGTRKTKPT*QA 470
           P+E   +P PY   + P   +   T++S G    +P+ Q+
Sbjct: 182 PTEANFQPHPYYPKYEPDAYITASTERSRGVTGDQPSLQS 221


>AF395079-1|AAK97461.1|  371|Anopheles gambiae basic
           helix-loop-helix transcriptionfactor ASH protein.
          Length = 371

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = +1

Query: 199 NRKISKLEVIQHVIDYICDLQSALENH 279
           N+K+SK++ ++  ++YI  LQ  L+ +
Sbjct: 144 NKKLSKVDTLRLAVEYIRSLQRMLDEN 170


>AF444780-1|AAL37901.1| 1152|Anopheles gambiae Toll protein.
          Length = 1152

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = -3

Query: 553  PWQRWPLRGIFININHK*VLT*VAFNTTACQVGFVFLVPFDFC--VRVWRVICGGWCW 386
            P ++  L  + ++  H  VLT V  +  AC V  + LV + +   ++VW    G   W
Sbjct: 827  PLEQMTLSDLCVDRTHMIVLTCVIVSVVACLVAALSLVYYTYKLELKVWLFKHGLCLW 884


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 655,573
Number of Sequences: 2352
Number of extensions: 12457
Number of successful extensions: 24
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 66904800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)