Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0196
         (669 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g02340.1 68414.m00180 long hypocotyl in far-red 1 (HFR1) / re...    31   0.92 
At5g46880.1 68418.m05777 homeobox-leucine zipper family protein ...    30   1.2  
At2g42280.1 68415.m05233 basic helix-loop-helix (bHLH) family pr...    30   1.6  
At2g02490.1 68415.m00188 hydroxyproline-rich glycoprotein family...    30   1.6  
At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family...    30   1.6  
At1g05805.1 68414.m00607 basic helix-loop-helix (bHLH) family pr...    28   4.9  
At1g62975.1 68414.m07111 basic helix-loop-helix (bHLH) family pr...    28   6.5  
At1g20960.1 68414.m02624 U5 small nuclear ribonucleoprotein heli...    28   6.5  

>At1g02340.1 68414.m00180 long hypocotyl in far-red 1 (HFR1) /
           reduced phytochrome signaling (REP1) / basic
           helix-loop-helix FBI1 protein (FBI1) / reduced
           sensitivity to far-red light (RSF1) / bHLH protein 26
           (BHLH026) (BHLH26) identical to SP|Q9FE22 Long hypocotyl
           in far-red 1 (bHLH-like protein HFR1) (Reduced
           phytochrome signaling) (Basic helix-loop-helix FBI1
           protein) (Reduced sensitivity to far-red light)
           [Arabidopsis thaliana]
          Length = 292

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 23/67 (34%), Positives = 33/67 (49%)
 Frame = +1

Query: 91  VPAIASGRVQRHRDGENAEIQMYLSKLQDLVPFMPKNRKISKLEVIQHVIDYICDLQSAL 270
           VP++     +R R  E    +M   KLQ LVP   K  K+S   V+   I+Y+ +LQ  L
Sbjct: 133 VPSVTRKGSKRRRRDEKMSNKM--RKLQQLVPNCHKTDKVS---VLDKTIEYMKNLQLQL 187

Query: 271 ENHPAVG 291
           +    VG
Sbjct: 188 QMMSTVG 194


>At5g46880.1 68418.m05777 homeobox-leucine zipper family protein /
           lipid-binding START domain-containing protein similar to
           HD-Zip homeo domain OCL4 protein GI:8920425 from [Zea
           mays];  contains Pfam PF00046: Homeobox domain and Pfam
           PF01852: START domain
          Length = 820

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +3

Query: 324 TLRSVAAAPPSEETARPSPYAQHHPPQITLHTRTQKSN 437
           T R + + PPS+    PSP   HH P + L       N
Sbjct: 240 TGRPMQSMPPSQPLINPSPMLPHHQPSLELDMSVYAGN 277


>At2g42280.1 68415.m05233 basic helix-loop-helix (bHLH) family
           protein
          Length = 359

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 22/59 (37%), Positives = 31/59 (52%)
 Frame = +1

Query: 85  ASVPAIASGRVQRHRDGENAEIQMYLSKLQDLVPFMPKNRKISKLEVIQHVIDYICDLQ 261
           A+ P   + RV+R R  E       + KLQ+LVP M K    S  +++   +DYI DLQ
Sbjct: 286 ATHPRSIAERVRRTRISER------MRKLQELVPNMDKQTNTS--DMLDLAVDYIKDLQ 336


>At2g02490.1 68415.m00188 hydroxyproline-rich glycoprotein family
           protein related to LENOD2 [Lupinus luteus]
           gi|296830|emb|CAA39050;  and genefinder
          Length = 302

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 386 PTPSSANHPPHTNTEIKRHQ 445
           P P S  HPPH NT+I  +Q
Sbjct: 82  PVPPSPGHPPHQNTKISVNQ 101



 Score = 28.7 bits (61), Expect = 3.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 386 PTPSSANHPPHTNTEIKRHQ 445
           P P S  HPPH N +I  +Q
Sbjct: 168 PVPPSLKHPPHQNAKISMNQ 187



 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 386 PTPSSANHPPHTNTEIKRHQ 445
           P P S  HPPH N +I  +Q
Sbjct: 53  PVPPSPGHPPHQNAKISVNQ 72



 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 386 PTPSSANHPPHTNTEIKRHQ 445
           P P S  HPPH N +I  +Q
Sbjct: 111 PVPPSPGHPPHQNAKISVNQ 130


>At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 1696

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 339 AAAPPSEETARPSPYAQHHPPQITLHTRTQKSNGTRK 449
           A  PP      P P  Q HP    L+ R+ +SNG R+
Sbjct: 26  APLPPPPPLPPPPPPRQSHPESPNLYGRSTQSNGQRQ 62


>At1g05805.1 68414.m00607 basic helix-loop-helix (bHLH) family
           protein
          Length = 362

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +1

Query: 160 LSKLQDLVPFMPKNRKISKLEVIQHVIDYICDLQSALEN 276
           L KLQDLVP M K    S  +++   + +I  LQ  L+N
Sbjct: 309 LKKLQDLVPNMDKQTSYS--DMLDLAVQHIKGLQHQLQN 345


>At1g62975.1 68414.m07111 basic helix-loop-helix (bHLH) family
           protein (bHLH125) contains Pfam profile: PF00010
           helix-loop-helix DNA-binding domain;  supporting cDNA
           gi|20805889|gb|AF506369.1|
          Length = 259

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = +1

Query: 121 RHRDGENA---EIQMYLSKLQDLVPFMPKNRKISKLEVIQHVIDYICDLQ 261
           +HRD E     E+     +L+ L+PF     K S  + I   ++YI DLQ
Sbjct: 77  KHRDIERQRRQEVSSLFKRLRTLLPFQYIQGKRSTSDHIVQAVNYIKDLQ 126


>At1g20960.1 68414.m02624 U5 small nuclear ribonucleoprotein helicase,
            putative similar to SP|O75643 U5 small nuclear
            ribonucleoprotein 200 kDa helicase {Homo sapiens};
            contains Pfam profiles PF00270: DEAD/DEAH box helicase,
            PF00271: Helicase conserved C-terminal domain, PF02889:
            Sec63 domain
          Length = 2171

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = +1

Query: 160  LSKLQDLVPFMPKNRKISKLEVIQHVIDYICDLQSALENHPAVGQFDA 303
            L KL++L PF+ + R+ +  E + H I Y+ +  S+L+       F+A
Sbjct: 1618 LGKLEELDPFVEQIREETLKETLCHGIGYLHEGLSSLDQEIVTQLFEA 1665


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,765,909
Number of Sequences: 28952
Number of extensions: 267360
Number of successful extensions: 824
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)