Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0195
         (669 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    25   0.56 
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    25   0.56 
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    25   0.74 
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    25   0.74 
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    25   0.74 
DQ855498-1|ABH88185.1|  127|Tribolium castaneum chemosensory pro...    24   0.98 
AJ973445-1|CAJ01492.1|  127|Tribolium castaneum hypothetical pro...    24   0.98 

>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 25.0 bits (52), Expect = 0.56
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 92  SADSGNSSYTINVNIIVFESSSCRFLQPG 6
           SAD G    T   N++V  + SC ++ PG
Sbjct: 95  SADEGFDG-TFQTNVVVKHNGSCLYVPPG 122


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 25.0 bits (52), Expect = 0.56
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 92  SADSGNSSYTINVNIIVFESSSCRFLQPG 6
           SAD G    T   N++V  + SC ++ PG
Sbjct: 95  SADEGFDG-TFQTNVVVKHNGSCLYVPPG 122


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 24.6 bits (51), Expect = 0.74
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 92  SADSGNSSYTINVNIIVFESSSCRFLQPG 6
           SAD G    T   N++V    SC ++ PG
Sbjct: 95  SADEGFDG-TFQTNVVVKHGGSCLYVPPG 122


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 24.6 bits (51), Expect = 0.74
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 92  SADSGNSSYTINVNIIVFESSSCRFLQPG 6
           SAD G    T   N++V    SC ++ PG
Sbjct: 95  SADEGFDG-TFQTNVVVKHGGSCLYVPPG 122


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 24.6 bits (51), Expect = 0.74
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 92  SADSGNSSYTINVNIIVFESSSCRFLQPG 6
           SAD G    T   N++V    SC ++ PG
Sbjct: 95  SADEGFDG-TFQTNVVVKHGGSCLYVPPG 122


>DQ855498-1|ABH88185.1|  127|Tribolium castaneum chemosensory
           protein 12 protein.
          Length = 127

 Score = 24.2 bits (50), Expect = 0.98
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +3

Query: 378 DVAQGIVNAARDDDTKCEVYQAVGPK---RYLLADLVDWFYKLMRKDEKWGGY 527
           ++   + +A +   +KC   Q  G +   RYL+ +  DW+ +L  K +  G Y
Sbjct: 60  ELKNNLADALQTSCSKCSQRQKDGSRTIIRYLIKNKRDWWNELEAKYDPTGIY 112


>AJ973445-1|CAJ01492.1|  127|Tribolium castaneum hypothetical
           protein protein.
          Length = 127

 Score = 24.2 bits (50), Expect = 0.98
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +3

Query: 378 DVAQGIVNAARDDDTKCEVYQAVGPK---RYLLADLVDWFYKLMRKDEKWGGY 527
           ++   + +A +   +KC   Q  G +   RYL+ +  DW+ +L  K +  G Y
Sbjct: 60  ELKNNLADALQTSCSKCSQRQQDGSRTIIRYLIKNKRDWWNELEAKYDPTGIY 112


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,194
Number of Sequences: 336
Number of extensions: 3309
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17385535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)