Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0195
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa...    31   0.15 
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    27   2.4  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.2  
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces...    26   5.6  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    26   5.6  
SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p...    26   5.6  
SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism...    25   9.9  

>SPCC553.09c |spb70|pol12|DNA polymerase alpha
           B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -1

Query: 231 LGIPL*LHTLPNTCLFSKQTVSSGQEVSDVLQHLNKTD 118
           LG+P      PN C+FS   V  G   +D+L H ++ +
Sbjct: 411 LGLPSNFKCFPNPCMFSINDVVFGVSTNDILLHTSREE 448


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 144 HPKPLVLKKPSAWKISKYLGECAVREEY 227
           H  P  L +PSA ++ KYL E A +  Y
Sbjct: 4   HDPPAPLSQPSASRLQKYLLESAEKHAY 31


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
 Frame = -3

Query: 667 PITTYXEVASLSIPSQ*RFPSG*AGEMALTKATF--RGSIGSYFMS*RMYPPHFSSFLIS 494
           P ++    AS S+ S    PS  +  ++ + AT     S  S   S     P  SSF+ S
Sbjct: 23  PASSSSAAASTSLSSSSVIPSSSSSMLSSSSATAISSSSSSSPLSSSSFTSPASSSFITS 82

Query: 493 L*NQSTKSASK*RFGPTAW*TSHLVSSSRAAFT 395
           L + S++ +S      T+  ++ L SSS A+ T
Sbjct: 83  LVSSSSQQSSSSSASLTSSSSATLTSSSSASPT 115


>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 662

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 546 YDPILPLKVALVNAISPAYPLGNLHWEGIER-EATSXYV 659
           Y P++     LV   +PAYP  + +W  +ER   T  Y+
Sbjct: 327 YGPLMLGAATLVFESTPAYPDYSRYWSVVERHRLTQWYI 365


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 330  LYKNGLATVKQPVFVSDVAQGI 395
            L K GL++ K P+FVS + +G+
Sbjct: 1016 LGKLGLSSSKSPIFVSSILEGL 1037


>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 608

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = -2

Query: 215 DCTLSQILAYFPSRRFLQDKRFRMFFSI*IRQMNESLNSFFSADSGNSSYTINVNII 45
           D  L+ I AY+   RFL +K F +F       ++E++  FF A+      TI  N +
Sbjct: 223 DQLLNDICAYYGYSRFLAEKLFELF------SVSEAV-EFFEANEMPRPVTIRTNTL 272


>SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 24/112 (21%), Positives = 48/112 (42%), Gaps = 5/112 (4%)
 Frame = +3

Query: 12  LQESARGRFKYNDVHVDGVRRIARICREEGVERFIHLSYLNAEEHPKPLVLK--KPS--A 179
           L  + +G   Y DV ++   +      E G  R+I +S  N E   + L +   KP+   
Sbjct: 129 LPRNEKGELIYEDVPIEETWQAMEELLETGKVRYIGISNFNNEYLDRVLKIAKVKPTIHQ 188

Query: 180 WKISKYLGECAVREEYPTATI-IRASDIYGSEDRFLRSLVNKMRSHSNLMPL 332
            ++  YL +    E++    I + A     +++    S ++K+  H  L+ +
Sbjct: 189 MELHPYLPQTEYLEKHKKLQIHVSAYSPLANQNDAYNSDISKLIEHKTLVDI 240


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,772,730
Number of Sequences: 5004
Number of extensions: 57290
Number of successful extensions: 148
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)