Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0195
(669 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1223 + 35033273-35033353,35033455-35033539,35033613-350336... 79 2e-15
02_05_1108 - 34166672-34166695,34166864-34166932,34167031-341671... 40 0.002
02_05_1103 - 34136955-34136978,34137147-34137215,34137314-341374... 40 0.002
02_05_1100 - 34108581-34108584,34109646-34109701,34110470-341105... 40 0.002
01_05_0612 - 23652121-23652400,23653031-23654427 31 1.1
07_01_0552 + 4109906-4109983,4110422-4110484,4110496-4110525,411... 29 2.5
05_02_0131 - 6919143-6920125,6920334-6920529 29 2.5
05_02_0128 - 6890918-6891900,6892929-6893124 29 2.5
11_06_0754 - 26935647-26937780,26940890-26941827 29 3.3
02_05_0515 + 29689259-29689535,29689867-29690209,29690475-296907... 29 4.4
04_03_0819 + 20018496-20019487,20019587-20019721,20019834-200199... 28 5.9
>02_05_1223 +
35033273-35033353,35033455-35033539,35033613-35033683,
35034400-35034531,35034654-35034769,35035128-35035251,
35035349-35035417,35035508-35035628,35035707-35035843
Length = 311
Score = 79.4 bits (187), Expect = 2e-15
Identities = 55/167 (32%), Positives = 90/167 (53%), Gaps = 2/167 (1%)
Frame = +3
Query: 36 FKYNDVHVDGVRRIARICREEG-VERFIHLSYLNAEEHPKPLVLKKPSAWKISKYLGECA 212
+ +++V+ ++A I +E G + RFI +S L A PS +K GE +
Sbjct: 64 YGFDEVNHHMAEQLAMISKEHGGIMRFIQVSSLGASA-------SSPSRMLRAKAAGEES 116
Query: 213 VREEYPTATIIRASDIYGSEDRFLRSLVNKMRSHSNLMPLYKNGLATVKQPVFVSDVAQG 392
V +E+P ATI+R + + G+EDR L + + +PL +G +T QPV+V DVA
Sbjct: 117 VLKEFPEATIMRPATMIGTEDRILNRWA-QFAKNWGFLPLVDSG-STKIQPVYVVDVAAA 174
Query: 393 IVNAARDDDTKC-EVYQAVGPKRYLLADLVDWFYKLMRKDEKWGGYI 530
IVN+ +DD T + Y+ GP+ Y + +L + Y+ +R +W YI
Sbjct: 175 IVNSLKDDGTSMGKTYELGGPEIYTVHELAELMYETIR---EWPRYI 218
>02_05_1108 -
34166672-34166695,34166864-34166932,34167031-34167154,
34167192-34167256,34167726-34167854,34168473-34168547,
34171613-34171777,34171864-34172063,34172866-34172963,
34173719-34173819,34173915-34174040
Length = 391
Score = 39.9 bits (89), Expect = 0.002
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +3
Query: 360 QPVFVSDVAQGIVNAARDDDTKC-EVYQAVGPKRYLLADLVDWFYKLMRKDEKWGGYI 530
QPV+V DVA IVN+ +DD T + Y GP+ Y + DL + Y+ + +W YI
Sbjct: 322 QPVYVVDVAAAIVNSLKDDGTSMGKSYGLGGPEIYTVHDLAELMYETIC---EWPRYI 376
>02_05_1103 -
34136955-34136978,34137147-34137215,34137314-34137437,
34137475-34137539,34138009-34138137,34138756-34138830,
34141896-34142060,34142147-34142346,34143149-34143246,
34144002-34144102,34144198-34144323
Length = 391
Score = 39.9 bits (89), Expect = 0.002
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +3
Query: 360 QPVFVSDVAQGIVNAARDDDTKC-EVYQAVGPKRYLLADLVDWFYKLMRKDEKWGGYI 530
QPV+V DVA IVN+ +DD T + Y GP+ Y + DL + Y+ + +W YI
Sbjct: 322 QPVYVVDVAAAIVNSLKDDGTSMGKSYGLGGPEIYTVHDLAELMYETIC---EWPRYI 376
>02_05_1100 -
34108581-34108584,34109646-34109701,34110470-34110509,
34110955-34111066,34111690-34111767,34112004-34112088,
34112596-34112664,34112763-34112886,34112924-34112988,
34113458-34113586,34114205-34114279,34117344-34117508,
34117595-34117794,34118597-34118694,34119450-34119550,
34119649-34119774
Length = 508
Score = 39.9 bits (89), Expect = 0.002
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +3
Query: 360 QPVFVSDVAQGIVNAARDDDTKC-EVYQAVGPKRYLLADLVDWFYKLMRKDEKWGGYI 530
QPV+V DVA IVN+ +DD T + Y GP+ Y + DL + Y+ + +W YI
Sbjct: 322 QPVYVVDVAAAIVNSLKDDGTSMGKSYGLGGPEIYTVHDLAELMYETIC---EWPRYI 376
>01_05_0612 - 23652121-23652400,23653031-23654427
Length = 558
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +3
Query: 51 VHVDGVRRIARICREEGVERFIHLSYL-NAEEHPKPLVLKKPSAWKISKYLG 203
+++DG R I +CR G HL + + + L + +P A K+ KY+G
Sbjct: 170 INIDGSRNIGILCRNNGEFVVAHLGGMTSVGDGGSGLPITRPVAAKLCKYVG 221
>07_01_0552 + 4109906-4109983,4110422-4110484,4110496-4110525,
4110567-4110621,4111046-4111143,4112259-4112417,
4112518-4112577,4113436-4113624,4113749-4113802,
4113959-4114045,4114149-4114881,4115282-4115373,
4115739-4115812,4116097-4116199,4116342-4117204,
4117649-4117724,4117861-4117972,4118092-4118168,
4118272-4118352,4118710-4118789,4118860-4118875
Length = 1059
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +3
Query: 294 VNKMRSHSNLMPLYKNGLATVKQPVFVSDVAQGIVNAARDDDTKCEVYQAVG 449
+NK + H+ + PLYK ++ P+F+S + + V TK +Y+A G
Sbjct: 876 LNK-KFHARIKPLYKQRFFSILMPIFLSKIKESTVMT-----TKLVLYRAFG 921
>05_02_0131 - 6919143-6920125,6920334-6920529
Length = 392
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +3
Query: 72 RIARICREEGVE-RFIHLSYLNAEEHPKPLVLKKPS 176
++ RIC G+E R+IHL EHP+ + PS
Sbjct: 61 KMKRICHRSGIEKRYIHLDEKLIREHPEIIDKHMPS 96
>05_02_0128 - 6890918-6891900,6892929-6893124
Length = 392
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +3
Query: 72 RIARICREEGVE-RFIHLSYLNAEEHPKPLVLKKPS 176
++ RIC G+E R+IHL EHP+ + PS
Sbjct: 61 KMKRICHRSGIEKRYIHLDEKLIREHPEIIDKHMPS 96
>11_06_0754 - 26935647-26937780,26940890-26941827
Length = 1023
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 96 EGVERFIHLSYLNAEEHPKPLVL 164
EG+++ + LSY N EH KP VL
Sbjct: 446 EGIKQVLDLSYNNLSEHLKPCVL 468
>02_05_0515 +
29689259-29689535,29689867-29690209,29690475-29690746,
29691282-29691478,29691874-29692237,29692831-29692898
Length = 506
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +3
Query: 45 NDVHVDGVRRIARICREEGVERFIHLSYLNAEEHPKPLV 161
++V+++G + C E GV R +++S N +P+V
Sbjct: 131 DEVNINGTCNVLDACHEHGVRRLVYVSTYNVVFGGEPIV 169
>04_03_0819 + 20018496-20019487,20019587-20019721,20019834-20019978,
20020135-20020416,20020649-20020910,20021028-20021224,
20021315-20021425,20022341-20022392,20022442-20022584,
20023121-20023210,20023300-20023800,20024108-20024176,
20024866-20025011,20025475-20025530,20026140-20026286,
20027405-20027530,20027608-20027876,20028026-20028127
Length = 1274
Score = 28.3 bits (60), Expect = 5.9
Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 13/122 (10%)
Frame = +3
Query: 90 REEGVERFIHLSYLNAEEHPKPLVLKKPSAWKISKYLGECAVREEYPTA-TIIRASDIYG 266
+E G+ +FI +S ++ P L S + K E V +YPT+ ++R IYG
Sbjct: 1107 KEFGIPKFILIS---VHDYNLPSFLLN-SGYFTGKRKAESEVLSKYPTSGVVLRPGFIYG 1162
Query: 267 SE--DRF----------LRSLVNKMRSHSNLMPLYKNGLATVKQPVFVSDVAQGIVNAAR 410
D F L L++ + + + + + PV V DVA ++N
Sbjct: 1163 KRKVDGFEIPLDVVGQPLEKLLSSVENFTKPLSSLPASDLLLAPPVSVDDVAYAVINGVI 1222
Query: 411 DD 416
DD
Sbjct: 1223 DD 1224
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,756,891
Number of Sequences: 37544
Number of extensions: 357159
Number of successful extensions: 834
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -