Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0195
         (669 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24675| Best HMM Match : No HMM Matches (HMM E-Value=.)             130   1e-30
SB_20141| Best HMM Match : BTK (HMM E-Value=6.2)                       31   0.85 
SB_32677| Best HMM Match : SapB_1 (HMM E-Value=4.1)                    29   2.6  
SB_35066| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_30217| Best HMM Match : Flavi_glycop_C (HMM E-Value=8.2)            28   6.0  
SB_27115| Best HMM Match : SAM_1 (HMM E-Value=1.7e-08)                 28   7.9  
SB_27114| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_24675| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 329

 Score =  130 bits (314), Expect = 1e-30
 Identities = 66/156 (42%), Positives = 99/156 (63%)
 Frame = +3

Query: 36  FKYNDVHVDGVRRIARICREEGVERFIHLSYLNAEEHPKPLVLKKPSAWKISKYLGECAV 215
           F + +VHVDG R IA+  +E GVER IH+S LNA        +  PS +  +K LGE AV
Sbjct: 106 FNFEEVHVDGARTIAKAAKEAGVERLIHVSALNA-------AVDSPSKFLHTKALGEQAV 158

Query: 216 REEYPTATIIRASDIYGSEDRFLRSLVNKMRSHSNLMPLYKNGLATVKQPVFVSDVAQGI 395
           REE+P ATI+R   ++G ED+FL      +RS    +PL + G+ T K PV+V+DVAQ I
Sbjct: 159 REEFPNATILRPGTVFGHEDKFLNYYAY-LRSLPLGIPLIEGGMNTKKMPVYVADVAQSI 217

Query: 396 VNAARDDDTKCEVYQAVGPKRYLLADLVDWFYKLMR 503
           + A +++ +  + ++ VGP  Y L D++D+ Y++M+
Sbjct: 218 LEAIKEEASVGQTFELVGPSEYYLYDIIDYIYRVMK 253


>SB_20141| Best HMM Match : BTK (HMM E-Value=6.2)
          Length = 254

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 167 ETVCLENKQVFGRVCSQRGIPNCHYY 244
           E  CL NK++F  + S+RG+P C  Y
Sbjct: 96  ERDCLSNKRLFSCMRSRRGLPGCQSY 121


>SB_32677| Best HMM Match : SapB_1 (HMM E-Value=4.1)
          Length = 256

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -1

Query: 576 KQLSGAVSGRTSCRSECIHPIFRPSSLVCKTNQPNRQVSSVL 451
           K + G V+ R   R+ CI P+F  + L+ K  +   Q+S++L
Sbjct: 168 KSVFGKVAHRKGIRAACICPVFTDTPLLDKIKEEMPQMSTLL 209


>SB_35066| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 310

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 161 PEETVCLENKQVFGRVCSQRGIPNCH 238
           P E++C +  Q+F  VC+  GIP  H
Sbjct: 131 PTESLCQKQLQIFIEVCNYLGIPIAH 156


>SB_30217| Best HMM Match : Flavi_glycop_C (HMM E-Value=8.2)
          Length = 132

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 388 RVS*TPRATTTLNVKSTKPLGQNA-TYLPIWL 480
           +V   P  T TL    T PL  +A +YLP+WL
Sbjct: 12  KVKEEPSGTMTLECHYTTPLPSHAASYLPVWL 43


>SB_27115| Best HMM Match : SAM_1 (HMM E-Value=1.7e-08)
          Length = 527

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 135 AEEHPKPLVLKKPSAWKISKYLGECAVREEYPTATI 242
           +EEHP PL  + P   + SK L    +++ + T TI
Sbjct: 47  SEEHPPPLPKRGPKLKQRSKTLDHIEIQQGFKTFTI 82


>SB_27114| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 116

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 135 AEEHPKPLVLKKPSAWKISKYLGECAVREEYPTATI 242
           +EEHP PL  + P   + SK L    +++ + T TI
Sbjct: 53  SEEHPPPLPKRGPKLKQRSKTLDHIEIQQGFKTFTI 88


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,769,050
Number of Sequences: 59808
Number of extensions: 416007
Number of successful extensions: 1118
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)