Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0195
         (669 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT004491-1|AAO42655.1|  327|Drosophila melanogaster GM13757p pro...   254   1e-67
BT029034-1|ABJ16967.1|  324|Drosophila melanogaster IP02858p pro...   251   6e-67
AE014296-3380|AAF51613.1|  416|Drosophila melanogaster CG6020-PA...   251   6e-67
DQ162845-1|ABA42953.1| 1715|Drosophila melanogaster TRF2 protein.      29   5.7  
AY069554-1|AAL39699.1|  632|Drosophila melanogaster LD27895p pro...    29   5.7  
AJ238442-1|CAB41475.1|  537|Drosophila melanogaster TBP-like fac...    29   5.7  
AF136569-1|AAD28784.1|  632|Drosophila melanogaster TATA box bin...    29   5.7  
AE014298-1172|AAF46368.2|  632|Drosophila melanogaster CG18009-P...    29   5.7  
AE014298-1171|AAF46369.3|  632|Drosophila melanogaster CG18009-P...    29   5.7  

>BT004491-1|AAO42655.1|  327|Drosophila melanogaster GM13757p
           protein.
          Length = 327

 Score =  254 bits (621), Expect = 1e-67
 Identities = 124/211 (58%), Positives = 150/211 (71%)
 Frame = +3

Query: 36  FKYNDVHVDGVRRIARICREEGVERFIHLSYLNAEEHPKPLVLKKPSAWKISKYLGECAV 215
           FK+ DVHV+G  RIARI RE GVERFIHLS LN E +PK L +K  S W  SKY GE  V
Sbjct: 60  FKFKDVHVNGAERIARIAREAGVERFIHLSSLNVEANPKDLYVKGGSEWLKSKYEGELRV 119

Query: 216 REEYPTATIIRASDIYGSEDRFLRSLVNKMRSHSNLMPLYKNGLATVKQPVFVSDVAQGI 395
           R+ +P ATIIR +DIYGSEDRFLR   +  R     MPL+  G  TVKQPV+VSDVAQ I
Sbjct: 120 RDAFPNATIIRPADIYGSEDRFLRYYAHIWRRQFRSMPLWHKGEKTVKQPVYVSDVAQAI 179

Query: 396 VNAARDDDTKCEVYQAVGPKRYLLADLVDWFYKLMRKDEKWGGYIRYDMKYDPILPLKVA 575
           +NAA+D D+   +YQAVGPKRY L++LVDWF++LMRKD+K  GY+RYDM++DP   LK  
Sbjct: 180 INAAKDPDSAGRIYQAVGPKRYQLSELVDWFHRLMRKDQKRWGYMRYDMRWDPTFLLKAK 239

Query: 576 LVNAISPAYPLGNLHWEGIEREATSXYVVIG 668
           L + I P  P+G LH   IEREA +  V+ G
Sbjct: 240 LNSFICPGTPIGGLHPARIEREAVTDKVLTG 270


>BT029034-1|ABJ16967.1|  324|Drosophila melanogaster IP02858p
           protein.
          Length = 324

 Score =  251 bits (615), Expect = 6e-67
 Identities = 123/211 (58%), Positives = 149/211 (70%)
 Frame = +3

Query: 36  FKYNDVHVDGVRRIARICREEGVERFIHLSYLNAEEHPKPLVLKKPSAWKISKYLGECAV 215
           FK+ DVHV+G  RIARI RE GVER IHLS LN E +PK L +K  S W  SKY GE  V
Sbjct: 57  FKFKDVHVNGAERIARIAREAGVERLIHLSSLNVEANPKDLYVKGGSEWLKSKYEGELRV 116

Query: 216 REEYPTATIIRASDIYGSEDRFLRSLVNKMRSHSNLMPLYKNGLATVKQPVFVSDVAQGI 395
           R+ +P ATIIR +DIYGSEDRFLR   +  R     MPL+  G  TVKQPV+VSDVAQ I
Sbjct: 117 RDAFPNATIIRPADIYGSEDRFLRYYAHIWRRQFRSMPLWHKGEKTVKQPVYVSDVAQAI 176

Query: 396 VNAARDDDTKCEVYQAVGPKRYLLADLVDWFYKLMRKDEKWGGYIRYDMKYDPILPLKVA 575
           +NAA+D D+   +YQAVGPKRY L++LVDWF++LMRKD+K  GY+RYDM++DP   LK  
Sbjct: 177 INAAKDPDSAGRIYQAVGPKRYQLSELVDWFHRLMRKDQKRWGYMRYDMRWDPTFLLKAK 236

Query: 576 LVNAISPAYPLGNLHWEGIEREATSXYVVIG 668
           L + I P  P+G LH   IEREA +  V+ G
Sbjct: 237 LNSFICPGTPIGGLHPARIEREAVTDKVLTG 267


>AE014296-3380|AAF51613.1|  416|Drosophila melanogaster CG6020-PA
           protein.
          Length = 416

 Score =  251 bits (615), Expect = 6e-67
 Identities = 123/211 (58%), Positives = 149/211 (70%)
 Frame = +3

Query: 36  FKYNDVHVDGVRRIARICREEGVERFIHLSYLNAEEHPKPLVLKKPSAWKISKYLGECAV 215
           FK+ DVHV+G  RIARI RE GVER IHLS LN E +PK L +K  S W  SKY GE  V
Sbjct: 149 FKFKDVHVNGAERIARIAREAGVERLIHLSSLNVEANPKDLYVKGGSEWLKSKYEGELRV 208

Query: 216 REEYPTATIIRASDIYGSEDRFLRSLVNKMRSHSNLMPLYKNGLATVKQPVFVSDVAQGI 395
           R+ +P ATIIR +DIYGSEDRFLR   +  R     MPL+  G  TVKQPV+VSDVAQ I
Sbjct: 209 RDAFPNATIIRPADIYGSEDRFLRYYAHIWRRQFRSMPLWHKGEKTVKQPVYVSDVAQAI 268

Query: 396 VNAARDDDTKCEVYQAVGPKRYLLADLVDWFYKLMRKDEKWGGYIRYDMKYDPILPLKVA 575
           +NAA+D D+   +YQAVGPKRY L++LVDWF++LMRKD+K  GY+RYDM++DP   LK  
Sbjct: 269 INAAKDPDSAGRIYQAVGPKRYQLSELVDWFHRLMRKDQKRWGYMRYDMRWDPTFLLKAK 328

Query: 576 LVNAISPAYPLGNLHWEGIEREATSXYVVIG 668
           L + I P  P+G LH   IEREA +  V+ G
Sbjct: 329 LNSFICPGTPIGGLHPARIEREAVTDKVLTG 359


>DQ162845-1|ABA42953.1| 1715|Drosophila melanogaster TRF2 protein.
          Length = 1715

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 20/57 (35%), Positives = 28/57 (49%)
 Frame = +3

Query: 264  GSEDRFLRSLVNKMRSHSNLMPLYKNGLATVKQPVFVSDVAQGIVNAARDDDTKCEV 434
            GS++ FL S  NK  ++   +    NGL T K  +   +V Q I     DD+ K EV
Sbjct: 1202 GSKNMFLTSSENK--ANLPTVASNGNGLITAKMDLLEEEVMQSITVIDDDDEEKKEV 1256


>AY069554-1|AAL39699.1|  632|Drosophila melanogaster LD27895p
           protein.
          Length = 632

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 20/57 (35%), Positives = 28/57 (49%)
 Frame = +3

Query: 264 GSEDRFLRSLVNKMRSHSNLMPLYKNGLATVKQPVFVSDVAQGIVNAARDDDTKCEV 434
           GS++ FL S  NK  ++   +    NGL T K  +   +V Q I     DD+ K EV
Sbjct: 119 GSKNMFLTSSENK--ANLPTVASNGNGLITAKMDLLEEEVMQSITVIDDDDEEKKEV 173


>AJ238442-1|CAB41475.1|  537|Drosophila melanogaster TBP-like factor
           protein.
          Length = 537

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 20/57 (35%), Positives = 28/57 (49%)
 Frame = +3

Query: 264 GSEDRFLRSLVNKMRSHSNLMPLYKNGLATVKQPVFVSDVAQGIVNAARDDDTKCEV 434
           GS++ FL S  NK  ++   +    NGL T K  +   +V Q I     DD+ K EV
Sbjct: 24  GSKNMFLTSSENK--ANLPTVASNGNGLITAKMDLLEEEVMQSITVIDDDDEEKKEV 78


>AF136569-1|AAD28784.1|  632|Drosophila melanogaster TATA box
           binding protein-relatedfactor 2 protein.
          Length = 632

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 20/57 (35%), Positives = 28/57 (49%)
 Frame = +3

Query: 264 GSEDRFLRSLVNKMRSHSNLMPLYKNGLATVKQPVFVSDVAQGIVNAARDDDTKCEV 434
           GS++ FL S  NK  ++   +    NGL T K  +   +V Q I     DD+ K EV
Sbjct: 119 GSKNMFLTSSENK--ANLPTVASNGNGLITAKMDLLEEEVMQSITVIDDDDEEKKEV 173


>AE014298-1172|AAF46368.2|  632|Drosophila melanogaster CG18009-PD,
           isoform D protein.
          Length = 632

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 20/57 (35%), Positives = 28/57 (49%)
 Frame = +3

Query: 264 GSEDRFLRSLVNKMRSHSNLMPLYKNGLATVKQPVFVSDVAQGIVNAARDDDTKCEV 434
           GS++ FL S  NK  ++   +    NGL T K  +   +V Q I     DD+ K EV
Sbjct: 119 GSKNMFLTSSENK--ANLPTVASNGNGLITAKMDLLEEEVMQSITVIDDDDEEKKEV 173


>AE014298-1171|AAF46369.3|  632|Drosophila melanogaster CG18009-PA,
           isoform A protein.
          Length = 632

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 20/57 (35%), Positives = 28/57 (49%)
 Frame = +3

Query: 264 GSEDRFLRSLVNKMRSHSNLMPLYKNGLATVKQPVFVSDVAQGIVNAARDDDTKCEV 434
           GS++ FL S  NK  ++   +    NGL T K  +   +V Q I     DD+ K EV
Sbjct: 119 GSKNMFLTSSENK--ANLPTVASNGNGLITAKMDLLEEEVMQSITVIDDDDEEKKEV 173


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,804,682
Number of Sequences: 53049
Number of extensions: 611170
Number of successful extensions: 1460
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1460
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2889369000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)