Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0195
         (669 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024807-2|AAF59528.2|  431|Caenorhabditis elegans Hypothetical ...   138   3e-33

>AC024807-2|AAF59528.2|  431|Caenorhabditis elegans Hypothetical
           protein Y53G8AL.2 protein.
          Length = 431

 Score =  138 bits (334), Expect = 3e-33
 Identities = 73/156 (46%), Positives = 98/156 (62%), Gaps = 1/156 (0%)
 Frame = +3

Query: 30  GRFKYNDVHVDGVRRIARICREEGVERFIHLSYLNAEEHPKPLVLKKPSAWKISKYLGEC 209
           G++ Y DV+  G RR+ARIC+E GVE+F+HLS L A   P+       S +  SK LGE 
Sbjct: 143 GKYNYYDVNDTGARRLARICKEMGVEKFVHLSALGATTQPQKGHFVAKSQFLHSKGLGEV 202

Query: 210 AVREEYPTATIIRASDIYGSEDRFLRSLVNKMR-SHSNLMPLYKNGLATVKQPVFVSDVA 386
           AVREE+P ATIIR S IYG  D F++  V++ R +  + + LYK G  T K P++V DVA
Sbjct: 203 AVREEFPEATIIRPSVIYGELDGFIQYYVSRWRKTPLDYVYLYKKGEETYKMPIWVGDVA 262

Query: 387 QGIVNAARDDDTKCEVYQAVGPKRYLLADLVDWFYK 494
            GI +A  D   K   Y+ VGP  Y L++L+D+ YK
Sbjct: 263 AGIQSAVNDPTAKGHTYEFVGPHCYQLSELIDFMYK 298


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,392,414
Number of Sequences: 27780
Number of extensions: 321091
Number of successful extensions: 772
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)