Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0195
         (669 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    25   0.65 
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    25   0.65 
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.6  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   6.1  
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    21   8.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.0  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   8.0  

>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 25.0 bits (52), Expect = 0.65
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 92  SADSGNSSYTINVNIIVFESSSCRFLQPG 6
           SAD G    T   N++V  + SC ++ PG
Sbjct: 146 SADEGFDG-TYQTNVVVTHNGSCLYVPPG 173


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 25.0 bits (52), Expect = 0.65
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 92  SADSGNSSYTINVNIIVFESSSCRFLQPG 6
           SAD G    T   N++V  + SC ++ PG
Sbjct: 146 SADEGFDG-TYQTNVVVTHNGSCLYVPPG 173


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 92  SADSGNSSYTINVNIIVFESSSCRFLQPG 6
           SAD G    T   +++V  + SC ++ PG
Sbjct: 78  SADEGFDG-TYQTSVVVTHNGSCLYVPPG 105


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +1

Query: 373 CRTSLRVS*TPRATTTLNVKSTKPLGQNATYLPI 474
           C T+ +       TTT+N  +T  +  + T +PI
Sbjct: 823 CVTTEQSVVVTNVTTTINTPTTSVISMSGTTVPI 856


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 201 PNTCLFSKQTVSSGQE 154
           PNTC     +VS+G+E
Sbjct: 592 PNTCKVIASSVSAGEE 607


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +3

Query: 609 GNLHWEGIERE 641
           G + WEG+E+E
Sbjct: 100 GGIFWEGLEKE 110


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = +3

Query: 450  PKRYLLADLVDWFYKLMRKDEKW--GGYIRYDMKYD 551
            P  YLL D +   Y   RK+  W  G ++  ++ Y+
Sbjct: 977  PTEYLLEDSMKQQYGKRRKEPPWLEGVHVTPELIYE 1012


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 11/39 (28%), Positives = 16/39 (41%)
 Frame = -1

Query: 282 KICLRNHRCLMLG**WQLGIPL*LHTLPNTCLFSKQTVS 166
           + CL  H   +      L  PL +H  P T +  K  +S
Sbjct: 603 RYCLFGHNVTLANKFESLSEPLRIHVSPTTYILLKYPIS 641


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,883
Number of Sequences: 438
Number of extensions: 3774
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)