Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0192
         (517 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    39   0.059
UniRef50_Q4A2C8 Cluster: Putative uncharacterized protein; n=1; ...    33   5.1  

>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 39.1 bits (87), Expect = 0.059
 Identities = 17/24 (70%), Positives = 19/24 (79%)
 Frame = -1

Query: 151 HRHSPLSFSSDLLSGSRFRSGGRF 80
           HR  PLSFS DLLSGSRFR+G  +
Sbjct: 392 HRCCPLSFSPDLLSGSRFRTGAEY 415


>UniRef50_Q4A2C8 Cluster: Putative uncharacterized protein; n=1;
           Emiliania huxleyi virus 86|Rep: Putative uncharacterized
           protein - Emiliania huxleyi virus 86
          Length = 194

 Score = 32.7 bits (71), Expect = 5.1
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +3

Query: 336 LNRSLQYDRRNLASLNIAAGELSEPYRELPNLYDVKKRDVQYACLRMLFNRFF 494
           L+++  Y R      +IAA  L E + +LPNL  +K  ++ Y  +  L +R F
Sbjct: 133 LSQTFSYYRHANQDQHIAAYLLVETFEKLPNLLVIKTPNIAYKAIAKLVSRLF 185


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 492,930,771
Number of Sequences: 1657284
Number of extensions: 9475823
Number of successful extensions: 19651
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19635
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 31782822356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)