Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0192
         (517 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyc...    29   0.55 
SPCP31B10.02 |||conserved eukaryotic protein|Schizosaccharomyces...    25   5.1  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    25   5.1  

>SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 413

 Score = 28.7 bits (61), Expect = 0.55
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +3

Query: 288 TMRAHRDTKLTE*SCPLNRSLQYDRRNLASLNIAAGELSEPYR 416
           T+ A+   K +E + P+N +L +   NL+  +  A  LSEP+R
Sbjct: 170 TLEAYVIAKASEKAFPINETLSH-LANLSKQDCVANSLSEPFR 211


>SPCP31B10.02 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 143

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 404 RTVPRITEFIRCQEKGCPICVFE 472
           R  P+  E + C + GC ICV++
Sbjct: 53  RVPPKPEEPLNCCQSGCAICVWD 75


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
           Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +3

Query: 315 LTE*SCPLNRSLQYDRRNLASLNIAAGELSEPYRELPNLYDV 440
           L + S P+ R+     + L +L+ + G + +PY E P+L D+
Sbjct: 696 LQDQSSPIRRAAAL--KALGNLSSSTGYVIDPYIEFPSLLDI 735


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,078,061
Number of Sequences: 5004
Number of extensions: 41100
Number of successful extensions: 100
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)