Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0192
         (517 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1129 + 34732007-34732091,34732814-34732934,34733012-347330...    30   1.3  
03_06_0148 + 31982976-31984097                                         29   2.2  
10_08_1047 - 22549376-22551271                                         29   2.9  
06_02_0251 - 13478902-13478952,13478989-13479055,13479168-134793...    27   8.9  

>01_06_1129 +
           34732007-34732091,34732814-34732934,34733012-34733083,
           34733168-34733242,34733348-34733419,34733514-34733675,
           34733780-34733854,34733932-34734003,34734089-34734160,
           34734245-34734313,34734388-34734462,34734557-34734628,
           34734732-34734866,34734946-34735415,34735490-34735648,
           34735741-34735880,34735974-34736193,34736305-34736540,
           34736627-34737130
          Length = 961

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 17/67 (25%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
 Frame = -1

Query: 460 YWTSLFLTSYKFGNSRYGSESSPAAIFRLAKLRR-SYCNERFSGQLHSVNFVSRCARIVK 284
           ++++L   +  F +S + + + P+A+F   +L++ S     FSG+L+  + +S   R+V 
Sbjct: 307 WFSTLTSLTTLFMDSDHLTGTIPSALFSFPQLQQISLAKNSFSGELNMSSNISSLLRVVN 366

Query: 283 FHSHQFF 263
             ++Q F
Sbjct: 367 LTNNQIF 373


>03_06_0148 + 31982976-31984097
          Length = 373

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 293 HRKISLSSIFHNAPXRSITSKILGRRHHA 207
           HRK S+   FH+ P R    + L RRH A
Sbjct: 199 HRKPSIPMPFHHVPGRRRARRALARRHGA 227


>10_08_1047 - 22549376-22551271
          Length = 631

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +2

Query: 194 LFIYWRDGVYPIFLKLY 244
           L +YWR G+YP+ L+L+
Sbjct: 115 LRLYWRGGIYPLVLQLF 131


>06_02_0251 -
           13478902-13478952,13478989-13479055,13479168-13479379,
           13480144-13481540,13481574-13482432,13482537-13482836
          Length = 961

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -1

Query: 421 NSRYGSESSPAAIFRLAKLRRSYCNERFSGQLHSVNFVS 305
           N+ Y  E   + I R  KL +  CN++ +   H V  VS
Sbjct: 700 NTSYNEEPEESIIKRKIKLHQEMCNDKDAQTKHKVEGVS 738


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,993,873
Number of Sequences: 37544
Number of extensions: 254841
Number of successful extensions: 510
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)